https://github.com/fluhus/biostuff

Computational biology packages for Go.
https://github.com/fluhus/biostuff

bioinformatics biology computational-biology data-analysis go golang

Last synced: 15 days ago
JSON representation

Computational biology packages for Go.

• Host: GitHub
• URL: https://github.com/fluhus/biostuff
• Owner: fluhus
• License: mit
• Created: 2014-05-15T10:20:59.000Z (over 11 years ago)
• Default Branch: master
• Last Pushed: 2026-01-01T23:15:45.000Z (25 days ago)
• Last Synced: 2026-01-07T10:45:41.305Z (20 days ago)
• Topics: bioinformatics, biology, computational-biology, data-analysis, go, golang
• Language: Go
• Homepage: https://fluhus.github.io/biostuff/
• Size: 507 KB
• Stars: 8
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

Awesome Lists containing this project

README

          
biostuff

========

[![Go Reference](https://pkg.go.dev/badge/github.com/fluhus/biostuff.svg)](https://pkg.go.dev/github.com/fluhus/biostuff)

[![Go Report Card](https://goreportcard.com/badge/github.com/fluhus/biostuff)](https://goreportcard.com/report/github.com/fluhus/biostuff)

Computational biology packages for Go, with emphasis on minimialism.

```

go get github.com/fluhus/biostuff/...

```

Package Overview

----------------

* Data formats

  * [bed](https://pkg.go.dev/github.com/fluhus/biostuff/formats/bed)

  * [fasta](https://pkg.go.dev/github.com/fluhus/biostuff/formats/fasta)

  * [fastq](https://pkg.go.dev/github.com/fluhus/biostuff/formats/fastq)

  * [genbank](https://pkg.go.dev/github.com/fluhus/biostuff/formats/genbank)

  * [newick](https://pkg.go.dev/github.com/fluhus/biostuff/formats/newick)

  * [sam](https://pkg.go.dev/github.com/fluhus/biostuff/formats/sam)

* Algorithms & data structures

  * [align](https://pkg.go.dev/github.com/fluhus/biostuff/align)

    sequence alignment logic

  * [mash](https://pkg.go.dev/github.com/fluhus/biostuff/mash/v2)

    implementation of Mash distance

  * [rarefy](https://pkg.go.dev/github.com/fluhus/biostuff/rarefy)

    rarefaction by read count

  * [regions](https://pkg.go.dev/github.com/fluhus/biostuff/regions)

    an index for interval (genes, etc.) overlap lookup

* Nucleotide & amino-acid sequence utilities

  * [sequtil](https://pkg.go.dev/github.com/fluhus/biostuff/sequtil)

Help or Get Help

----------------

Found a bug? Got feedback? Questions? Feel free to

[open an issue](https://github.com/fluhus/biostuff/issues/new)

and let me know!