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https://github.com/fo-dicom/fo-dicom

Fellow Oak DICOM for .NET, .NET Core, Universal Windows, Android, iOS, Mono and Unity
https://github.com/fo-dicom/fo-dicom

c-sharp dicom dot-net fo-dicom jpeg medical medical-imaging netcore netstandard nuget

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Fellow Oak DICOM for .NET, .NET Core, Universal Windows, Android, iOS, Mono and Unity

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README 

        
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# Fellow Oak DICOM



[![NuGet](https://img.shields.io/nuget/v/fo-dicom.svg)](https://www.nuget.org/packages/fo-dicom/)

![build development](https://github.com/fo-dicom/fo-dicom/workflows/build/badge.svg?branch=development)

[![codecov](https://codecov.io/gh/fo-dicom/fo-dicom/branch/development/graph/badge.svg)](https://codecov.io/gh/fo-dicom/fo-dicom)



### License

This library is licensed under the [Microsoft Public License (MS-PL)](http://opensource.org/licenses/MS-PL). See [License.txt](License.txt) for more information.



### Features

* Targets .NET Standard 2.0

* DICOM dictionary version 2024d

* High-performance, fully asynchronous `async`/`await` API

* JPEG (including lossless), JPEG-LS, JPEG2000, HTJPEG2000, and RLE image compression (via additional package)

* Supports very large datasets with content loading on demand

* Image rendering to System.Drawing.Bitmap or SixLabors.ImageSharp

* JSON and XML export/import

* Anonymization

* DICOM services

* Customize components via DI container 



### Supported Runtimes



Fellow Oak DICOM officially supports the following runtimes:



* .NET Core 8.0

* .NET Core 6.0

* .NET Framework 4.6.2



Other runtimes that implement .NET Standard 2.0 may work, but be aware that our CI pipeline only tests these platforms (and only on Windows)



### Installation

Easiest is to obtain *fo-dicom* binaries from [NuGet](https://www.nuget.org/packages/fo-dicom/). This package reference the core *fo-dicom* assemblies for all Microsoft and Xamarin platforms.



### NuGet Packages

*Valid for version 5.0.0 and later*



Package | Description

------- | -----------

[fo-dicom](https://www.nuget.org/packages/fo-dicom/) | Core package containing parser, services and tools.

[fo-dicom.Imaging.Desktop](https://www.nuget.org/packages/fo-dicom.Imaging.Desktop/) | Library with referencte to System.Drawing, required for rendering into Bitmaps

[fo-dicom.Imaging.ImageSharp](https://www.nuget.org/packages/fo-dicom.Imaging.ImageSharp/) | Library with reference to ImageSharp, can be used for platform independent rendering

[fo-dicom.Codecs](https://www.nuget.org/packages/fo-dicom.Codecs/) | Cross-platform Dicom codecs for fo-dicom, developed by Efferent Health (https://github.com/Efferent-Health/fo-dicom.Codecs)



### Documentation

Documentation, including API documentation, is available via GitHub pages:

- documentation for the latest release for [fo-dicom 4](https://fo-dicom.github.io/stable/v4/index.html) and

  [fo-dicom 5](https://fo-dicom.github.io/stable/v5/index.html)

- documentation for the development version for [fo-dicom 4](https://fo-dicom.github.io/dev/v4/index.html) and

  [fo-dicom 5](https://fo-dicom.github.io/dev/v5/index.html)



### Usage Notes



#### Getting started in modern .NET



If you are using the web application builder:



```csharp

var builder = WebApplication.CreateBuilder(args);

builder.Services.AddFellowOakDicom();

var app = builder.Build();

// This is still necessary for now until fo-dicom has first-class AspNetCore integration

DicomSetupBuilder.UseServiceProvider(app.Services);

```



If you are using the host builder:



```csharp

var host = Host.CreateDefaultBuilder(args)

    .ConfigureServices(services =>

    {

        services.AddFellowOakDicom();

    })

    .Build();



// This is still necessary for now until fo-dicom has first-class AspNetCore integration

DicomSetupBuilder.UseServiceProvider(host.Services);

```



If you are not using the host builder, you'll need to make your own service collection:



```csharp

var services = new ServiceCollection();

services.AddFellowOakDicom();

var serviceProvider = services.BuildServiceProvider();

DicomSetupBuilder.UseServiceProvider(serviceProvider);

```



#### Getting started in .NET Framework



Use `DicomSetupBuilder` to configure the internals of Fellow Oak DICOM:



```csharp

new DicomSetupBuilder()

    .RegisterServices(s => s.AddFellowOakDicom())

.Build();

```



#### Dependency injection support



Whenever you use APIs of Fellow Oak DICOM such as `DicomFile.Open`, `DicomServerFactory.Create`, the global statically registered service provider (`DicomSetupBuilder.UseServiceProvider`) will be used to resolve dependencies.  

Please note that using dependency injection is generally preferred over the static APIs, if it is available.



| Use case                                      | Static API                                                 | Can use dependency injection ?                   |

| --------------------------------------------- |------------------------------------------------------------| ------------------------------------------------ |

| Creating a DICOM server                       | `DicomServerFactory.Create`                                | Yes, use `IDicomServerFactory`                   |

| Creating a DICOM client                       | `DicomClientFactory.Create`                                | Yes, use `IDicomClientFactory`                   |

| Creating an advanced DICOM client connection  | `AdvancedDicomClientConnectionFactory.OpenConnectionAsync` | Yes, use `IAdvancedDicomClientConnectionFactory` |

| Opening a DICOM file                          | `DicomFile.OpenAsync(..)`                                  | No                                               |

| Rendering a DICOM file                        | `new DicomImage(..).RenderImage(..)`                       | No                                               |



#### Injecting custom dependencies into DICOM services



It is possible to inject custom dependencies into your DICOM services, but with one important requirement: **you must have these exact three constructor parameters: `INetworkStream stream, Encoding fallbackEncoding, ILogger logger`**. 

The names and their order don't matter, but the types do.

Yes, `ILogger` is a non-generic typed logger. If you want a `Logger`, you can **add** an extra constructor parameter and use it however you see fit.



Here is a full standalone example:



```csharp

using System.Text;

using FellowOakDicom;

using FellowOakDicom.Network;

using FellowOakDicom.Network.Client;



var host = Host.CreateDefaultBuilder(args)

    .ConfigureLogging(logging =>

    {

        logging.ClearProviders();

        logging.AddConsole();

        logging.SetMinimumLevel(LogLevel.Information);

    })

    .ConfigureServices(services =>

    {

        services.AddFellowOakDicom();

        services.AddHostedService();

        // This will be injected into the DICOM service

        services.AddSingleton();

    })

    .Build();



DicomSetupBuilder.UseServiceProvider(host.Services);



host.Run();



public class CustomDependency

{

    

}



public class Worker : IHostedService

{

    private readonly ILogger _logger;

    private readonly IDicomServerFactory _dicomServerFactory;

    private readonly IDicomClientFactory _dicomClientFactory;

    private IDicomServer? _server;



    public Worker(ILogger logger, IDicomServerFactory dicomServerFactory, IDicomClientFactory dicomClientFactory)

    {

        _logger = logger ?? throw new ArgumentNullException(nameof(logger));

        _dicomServerFactory = dicomServerFactory ?? throw new ArgumentNullException(nameof(dicomServerFactory));

        _dicomClientFactory = dicomClientFactory ?? throw new ArgumentNullException(nameof(dicomClientFactory));

    }



    public async Task StartAsync(CancellationToken cancellationToken)

    {

        _logger.LogInformation("Starting DICOM server");

        _server = _dicomServerFactory.Create(104);

        _logger.LogInformation("DICOM server is running");



        var client = _dicomClientFactory.Create("127.0.0.1", 104, false, "AnySCU", "AnySCP");



        _logger.LogInformation("Sending C-ECHO request");

        DicomCEchoResponse? response = null;

        await client.AddRequestAsync(new DicomCEchoRequest { OnResponseReceived = (_, r) => response = r});

        await client.SendAsync(cancellationToken);

        if (response != null)

        {

            _logger.LogInformation("C-ECHO response received");

        }

        else

        {

            _logger.LogError("No C-ECHO response received");

        }

    }



    public Task StopAsync(CancellationToken cancellationToken)

    {

        if (_server != null)

        {

            _server.Stop();

            _server.Dispose();

            _server = null;

        }

        return Task.CompletedTask;

    }

}



public class EchoService : DicomService, IDicomServiceProvider, IDicomCEchoProvider

{

    private readonly ILogger _logger;

    private readonly CustomDependency _customDependency;



    public EchoService(INetworkStream stream,

        Encoding fallbackEncoding, 

        ILogger logger,

        DicomServiceDependencies dependencies,

        CustomDependency customDependency) : base(stream, fallbackEncoding, logger, dependencies)

    {

        _logger = logger ?? throw new ArgumentNullException(nameof(logger));

        _customDependency = customDependency ?? throw new ArgumentNullException(nameof(customDependency));

    }



    public void OnReceiveAbort(DicomAbortSource source, DicomAbortReason reason) => _logger.LogInformation("Received abort");

    public void OnConnectionClosed(Exception exception) => _logger.LogInformation("Connection closed");



    public Task OnReceiveAssociationRequestAsync(DicomAssociation association)

    {

        foreach (DicomPresentationContext presentationContext in association.PresentationContexts)

            presentationContext.SetResult(DicomPresentationContextResult.Accept);

        return SendAssociationAcceptAsync(association);

    }



    public Task OnReceiveAssociationReleaseRequestAsync()

    {

        _logger.LogInformation("Received association release");

        return Task.CompletedTask;

    }



    public Task OnCEchoRequestAsync(DicomCEchoRequest request) => Task.FromResult(new DicomCEchoResponse(request, DicomStatus.Success));

}

```



#### Image rendering configuration

Out-of-the-box, *fo-dicom* defaults to an internal class *FellowOakDicom.Imaging.IImage*-style image rendering. To switch to Desktop-style or ImageSharp-style image rendering, you first have to add the nuget package you desire and then call:



```csharp

new DicomSetupBuilder()

    .RegisterServices(s => s.AddFellowOakDicom().AddImageManager())

.Build();

```



or



```csharp

new DicomSetupBuilder()

    .RegisterServices(s => s.AddFellowOakDicom().AddImageManager())

.Build();

```



Then when rendering you can cast the IImage to the type by



```csharp

var image = new DicomImage("filename.dcm");

var bitmap = image.RenderImage().As();

```



or



```csharp

var image = new DicomImage("filename.dcm");

var sharpimage = image.RenderImage().AsSharpImage();

```

    

#### Logging configuration

Fellow Oak DICOM uses `Microsoft.Extensions.Logging`, so if you are already using that, Fellow Oak DICOM logging will show up automatically.



In the past, Fellow Oak DICOM had a custom abstraction for logging: ILogger and ILogManager.

For backwards compatibility purposes, this is still supported but not recommended for new applications.



```csharp

services.AddLogManager();

```



where MyLogManager looks like this:



```

using FellowOakDicom.Log;



public class MyLogManager: ILogManager {

    public ILogger GetLogger(string name) {

        ...

    }

}

```



### Sample applications

There are a number of simple sample applications that use *fo-dicom* available in separate repository [here](https://github.com/fo-dicom/fo-dicom-samples). These also include the samples

that were previously included in the *Examples* sub-folder of the VS solutions.



### Examples



#### File Operations

```csharp

var file = DicomFile.Open(@"test.dcm");             // Alt 1

var file = await DicomFile.OpenAsync(@"test.dcm");  // Alt 2



var patientid = file.Dataset.GetString(DicomTag.PatientID);



file.Dataset.AddOrUpdate(DicomTag.PatientName, "DOE^JOHN");



// creates a new instance of DicomFile

var newFile = file.Clone(DicomTransferSyntax.JPEGProcess14SV1);



file.Save(@"output.dcm");             // Alt 1

await file.SaveAsync(@"output.dcm");  // Alt 2

```



#### Render Image to JPEG

```csharp

var image = new DicomImage(@"test.dcm");

image.RenderImage().AsBitmap().Save(@"test.jpg");                     // Windows Forms



```



#### C-Store SCU

```csharp

var client = DicomClientFactory.Create("127.0.0.1", 12345, false, "SCU", "ANY-SCP");

await client.AddRequestAsync(new DicomCStoreRequest(@"test.dcm"));

await client.SendAsync();

```



#### C-Echo SCU/SCP

```csharp

var server = DicomServerFactory.Create(12345);



var client = DicomClientFactory.Create("127.0.0.1", 12345, false, "SCU", "ANY-SCP");

client.NegotiateAsyncOps();

// Optionally negotiate user identity

client.NegotiateUserIdentity(new DicomUserIdentityNegotiation

{

    UserIdentityType = DicomUserIdentityType.Jwt,

    PositiveResponseRequested = true,

    PrimaryField = "JWT_TOKEN"

});

for (int i = 0; i < 10; i++)

    await client.AddRequestAsync(new DicomCEchoRequest());

await client.SendAsync();

```



#### C-Find SCU

```csharp

var cfind = DicomCFindRequest.CreateStudyQuery(patientId: "12345");

cfind.OnResponseReceived = (DicomCFindRequest rq, DicomCFindResponse rp) => {

	Console.WriteLine("Study UID: {0}", rp.Dataset.GetString(DicomTag.StudyInstanceUID));

};



var client = DicomClientFactory.Create("127.0.0.1", 11112, false, "SCU-AE", "SCP-AE");

await client.AddRequestAsync(cfind);

await client.SendAsync();

```



#### C-Move SCU

```csharp

var cmove = new DicomCMoveRequest("DEST-AE", studyInstanceUid);



var client = DicomClientFactory.Create("127.0.0.1", 11112, false, "SCU-AE", "SCP-AE");

await client.AddRequestAsync(cmove);

await client.SendAsync(); 

```



#### N-Action SCU

```csharp

// It is better to increase 'associationLingerTimeoutInMs' default is 50 ms, which may not be

// be sufficient

var dicomClient = DicomClientFactory.Create("127.0.0.1", 12345, false, "SCU-AE", "SCP-AE",

DicomClientDefaults.DefaultAssociationRequestTimeoutInMs, DicomClientDefaults.DefaultAssociationReleaseTimeoutInMs,5000);

var txnUid = DicomUIDGenerator.GenerateDerivedFromUUID().UID;

var nActionDicomDataSet = new DicomDataset

{

    { DicomTag.TransactionUID,  txnUid }

};

var dicomRefSopSequence = new DicomSequence(DicomTag.ReferencedSOPSequence);

var seqItem = new DicomDataset()

{

    { DicomTag.ReferencedSOPClassUID, "1.2.840.10008.5.1.4.1.1.1" },

    { DicomTag.ReferencedSOPInstanceUID, "1.3.46.670589.30.2273540226.4.54" }

};

dicomRefSopSequence.Items.Add(seqItem);

nActionDicomDataSet.Add(dicomRefSopSequence);

var nActionRequest = new DicomNActionRequest(DicomUID.StorageCommitmentPushModelSOPClass,

                DicomUID.StorageCommitmentPushModelSOPInstance, 1)

{

    Dataset = nActionDicomDataSet,

    OnResponseReceived = (DicomNActionRequest request, DicomNActionResponse response) => 

    {

        Console.WriteLine("NActionResponseHandler, response status:{0}", response.Status);

    },

};

await dicomClient.AddRequestAsync(nActionRequest);

dicomClient.OnNEventReportRequest = OnNEventReportRequest;

await dicomClient.SendAsync();



private static Task OnNEventReportRequest(DicomNEventReportRequest request)

{

    var refSopSequence = request.Dataset.GetSequence(DicomTag.ReferencedSOPSequence);

    foreach(var item in refSopSequence.Items)

    {

        Console.WriteLine("SOP Class UID: {0}", item.GetString(DicomTag.ReferencedSOPClassUID));

        Console.WriteLine("SOP Instance UID: {0}", item.GetString(DicomTag.ReferencedSOPInstanceUID));

    }

    return Task.FromResult(new DicomNEventReportResponse(request, DicomStatus.Success));

}

```



#### C-ECHO with advanced DICOM client connection: manual control over TCP connection and DICOM association

```csharp

var cancellationToken = CancellationToken.None;

// Alternatively, inject IDicomServerFactory via dependency injection instead of using this static method

using var server = DicomServerFactory.Create(12345); 



var connectionRequest = new AdvancedDicomClientConnectionRequest

{

    NetworkStreamCreationOptions = new NetworkStreamCreationOptions

    {

        Host = "127.0.0.1",

        Port = server.Port,

    }

};



// Alternatively, inject IAdvancedDicomClientConnectionFactory via dependency injection instead of using this static method

using var connection = await AdvancedDicomClientConnectionFactory.OpenConnectionAsync(connectionRequest, cancellationToken);



var associationRequest = new AdvancedDicomClientAssociationRequest

{

    CallingAE = "EchoSCU",

    CalledAE = "EchoSCP",

    // Optionally negotiate user identity

    UserIdentityNegotiation = new DicomUserIdentityNegotiation

    {

        UserIdentityType = DicomUserIdentityType.UsernameAndPasscode,

        PositiveResponseRequested = true,

        PrimaryField = "USERNAME",

        SecondaryField = "PASSCODE",

    }

};



var cEchoRequest = new DicomCEchoRequest();



using var association = await connection.OpenAssociationAsync(associationRequest, cancellationToken);

try

{

    DicomCEchoResponse cEchoResponse = await association.SendCEchoRequestAsync(cEchoRequest, cancellationToken).ConfigureAwait(false);

    

    Console.WriteLine(cEchoResponse.Status);

}

finally

{

    await association.ReleaseAsync(cancellationToken);

}

```



### New to DICOM?



If you are new to DICOM, then take a look at the DICOM tutorial of Saravanan Subramanian:

https://saravanansubramanian.com/dicomtutorials/

The author is also using fo-dicom in some code samples.