https://github.com/fomightez/binderized-gwascat

Using RStudio served via Binder that runs the gwascat package
https://github.com/fomightez/binderized-gwascat

Last synced: 3 months ago
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Using RStudio served via Binder that runs the gwascat package

• Host: GitHub
• URL: https://github.com/fomightez/binderized-gwascat
• Owner: fomightez
• License: mit
• Created: 2018-02-12T15:37:09.000Z (over 7 years ago)
• Default Branch: master
• Last Pushed: 2018-02-12T16:25:50.000Z (over 7 years ago)
• Last Synced: 2024-12-28T13:25:55.428Z (5 months ago)
• Language: R
• Size: 41 KB
• Stars: 0
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# RStudio with bioinformatics package GWASCAT that runs served via Binder 

[![Binder](http://mybinder.org/badge.svg)](http://mybinder.org/v2/gh/fomightez/binderized-gwascat/master)

This deploys a Binder that exposes the

RStudio UI instead of a Jupyter Notebook. It also installs

the gwascat bioinformatics package and adds a script

based on Vince Buffalo's [Using Bioconductor to Analyze your 23andme Data](http://www.vincebuffalo.com/blog/2012/03/12/using-bioconductor-to-analyze-your-23andme-data.html) updated to run in a relatively current R/RStudio/Bioconductor environment.

Running RStudio session

-----------------------

To start your RStudio session once [the Binder server](http://mybinder.org/v2/gh/fomightez/dockerfile-rstudio/master) has launched and you are greeted with the Jupyter dashboard, click on "New" in the top right,

and at the bottom will be `RStudio Session`.

Click that and your RStudio session will begin momentarily!

See `instructions.ipynb` for more details.

Details for the curious

--------------------

The provenance of this repository...  

The contents for this repository were copied from my repo [binderized-dockerfile-rstudio](https://github.com/fomightez/binderized-dockerfile-rstudio) and the `gwascat` package was added along with an updated version of the commands from Vince Buffalo's [Using Bioconductor to Analyze your 23andme Data](http://www.vincebuffalo.com/blog/2012/03/12/using-bioconductor-to-analyze-your-23andme-data.html).

See my repo [binderized-dockerfile-rstudio](https://github.com/fomightez/binderized-dockerfile-rstudio) for details on how I made that repo from [a repo set up as an example for RStudio in Binder using a Dockerfile](https://github.com/binder-examples/dockerfile-rstudio).