https://github.com/fomightez/cufflinks_docker
Docker container for Cufflinks for Transcriptome assembly and differential expression analysis for RNA-Seq
https://github.com/fomightez/cufflinks_docker
Last synced: 3 months ago
JSON representation
Docker container for Cufflinks for Transcriptome assembly and differential expression analysis for RNA-Seq
- Host: GitHub
- URL: https://github.com/fomightez/cufflinks_docker
- Owner: fomightez
- Created: 2017-03-29T16:26:35.000Z (about 8 years ago)
- Default Branch: master
- Last Pushed: 2017-05-10T17:36:57.000Z (about 8 years ago)
- Last Synced: 2024-12-28T13:25:45.253Z (5 months ago)
- Size: 3.91 KB
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
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README
[](https://microbadger.com/images/fomightez/rnaseqcufflinks "Get your own version badge on microbadger.com")[](https://microbadger.com/images/fomightez/rnaseqcufflinks "Get your own image badge on microbadger.com")
# cufflinks_docker
Docker container for Cufflinks for Transcriptome assembly and differential expression analysis for RNA-Seq
[The Docker image is available](https://hub.docker.com/r/fomightez/rnaseqcufflinks/) at Docker Hub.
Contents
--------
A Linux-based Docker container with Cufflinks.
Includes:
* Ubuntu base
* Cufflinks
*Specific versions and sources are made clear in [the Dockerfile](https://github.com/fomightez/cufflinks_docker/blob/master/Dockerfile).*
Use
----
Intended to be used with data in `/data` directory.
To pull and run first time.
docker run -v /data:/data -itd fomightez/rnaseqcufflinks
You may need to change first `/data` in that command to match path to your directory.
It starts detached and so you need to attach it; alternatively, use `docker run -v /data:/data -it fomightez/rnaseqcufflinks` to start and attach immediately.