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https://github.com/fomightez/dockerfiles
organizational page for my various Dockerfiles I use on the desktop and on servers and on work stations
https://github.com/fomightez/dockerfiles
docker linux mac-osx
Last synced: 22 days ago
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organizational page for my various Dockerfiles I use on the desktop and on servers and on work stations
- Host: GitHub
- URL: https://github.com/fomightez/dockerfiles
- Owner: fomightez
- Created: 2017-02-09T20:41:55.000Z (almost 8 years ago)
- Default Branch: master
- Last Pushed: 2017-09-24T20:48:27.000Z (over 7 years ago)
- Last Synced: 2024-10-25T05:50:07.635Z (2 months ago)
- Topics: docker, linux, mac-osx
- Homepage:
- Size: 16.6 KB
- Stars: 2
- Watchers: 2
- Forks: 0
- Open Issues: 0
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Metadata Files:
- Readme: README.md
Awesome Lists containing this project
README
# Dockerfiles
*(At first I thought the automated build settings at Docker Hub is based on a repo having a single Dockerfile, and so I thought I needed a separate repo for each. But [this repo](https://github.com/27Bslash6/docker) and [this one](https://github.com/andrejsavikin/Dockerfiles) indicate otherwise, and you can see the resulting builds [here](https://hub.docker.com/u/funkygibbon/) and [here](https://hub.docker.com/r/andrejsavikin/ubuntu-openjdk-8-jre/), respectively. Now I sort of wish I didn't remove my recent sub-directory hierarchy. Although if build a bunch together, might sometime encounter Docker Hub's restrictions on how long a build of a repo can be limited to? see [here](http://stackoverflow.com/questions/34440753/docker-hub-timeout-in-automated-build/34588866#34588866) and [here](http://stackoverflow.com/questions/36948145/chain-automated-builds-in-the-same-docker-hub-repository) for the limits info.)*
I want to easily track my Docker efforts, but for now have separate repos for those efforts, and so I made this markdown file to do this.
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Dockerfiles for Bioinformatics (Sequence Analysis) Docker images
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Dockerfiles for Docker images that make containers (generally linux-based) that aid in performing and documenting replicable (maybe even repeoducible bioinformatics efforts
Associated Docker hub images and github repos
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rnaseq_wang:
[](https://microbadger.com/images/fomightez/rnaseqwang "Get your own version badge on microbadger.com")[](https://microbadger.com/images/fomightez/rnaseqwang "Get your own image badge on microbadger.com")
Complete container for all command line processing as directed in
Using RNA-seq for Analysis of Differential Gene Expression in Fungal Species.
Wang C, Schröder MS, Hammel S, Butler G.
Methods Mol Biol. 2016;1361:1-40. doi: 10.1007/978-1-4939-3079-1_1. PMID: [26483013](https://www.ncbi.nlm.nih.gov/pubmed/26483013)
https://hub.docker.com/r/fomightez/rnaseqwang/
https://github.com/fomightez/rnaseq_wang
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cufflinks_docker:
[](https://microbadger.com/images/fomightez/rnaseqcufflinks "Get your own version badge on microbadger.com")[](https://microbadger.com/images/fomightez/rnaseqcufflinks "Get your own image badge on microbadger.com")
Docker container for Cufflinks for Transcriptome assembly and differential expression analysis for RNA-Seq
https://hub.docker.com/r/fomightez/rnaseqcufflinks/
https://github.com/fomightez/cufflinks_docker
bowtie1_docker:
[](https://microbadger.com/images/fomightez/bowtie1 "Get your own version badge on microbadger.com")[](https://microbadger.com/images/fomightez/bowtie1 "Get your own image badge on microbadger.com")
Docker container for Bowtie1 for splicing-unaware aligning of reads and differential expression analysis for RNA-Seq
https://hub.docker.com/r/fomightez/bowtie1/
https://github.com/fomightez/bowtie1_docker
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Dockerfiles for Structural Analysis (Structural Bioinformatics) Docker images
================================================
Dockerfiles for Docker images that make containers (generally linux-based) that aid in performing analysis of molecular structures
Associated Docker hub images and github repos
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CNSsolve1pt21:
Dockerfile to build images that will compile CNSsolve 1.21 (need old version for ultimately working with software at http://aria.pasteur.fr/supplementary-data/x-links)
NOTE: THE FILE `cns_solve_1.21_all-mp.tar.gz` MUST BE PROVIDED, SEE DOCKEFILE. Besides that, this Dockerfile will handle everything else to result in a freshly compiled version that will run.
https://github.com/fomightez/cnssolve1pt21_docker
XL-MOD:
Dockerfile to build images that will generate a modified CNS 1.21 for running XL-MS Protein assembly (XL-MOD) with a working directory set up as described at http://aria.pasteur.fr/supplementary-data/x-links/readme/view .
**NOTE**: THE FILE `cns_solve_1.21_all-mp.tar.gz` MUST BE PROVIDED, SEE DOCKEFILE. Besides that, this Dockerfile will handle everything else to result in modified, freshly compiled CNSsolve 1.21 able to run the scripts for XL-MS Protein assembly (XL-MOD).
https://github.com/fomightez/xlmod_docker
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Dockerfiles for Docker images that connect to Mac Desktop
=========================================================
Dockerfiles for Docker images that make containers (generally linux-based) that when run, can display to the screen of a properly set up Mac OSX system.
Associated Docker hub images and github repos
------------------------
Chromium:
[](https://microbadger.com/images/fomightez/chromium "Get your own version badge on microbadger.com")[](https://microbadger.com/images/fomightez/chromium "Get your own image badge on microbadger.com")
https://hub.docker.com/r/fomightez/chromium/
https://github.com/fomightez/docker-mac-linuxchromium
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Dockerfiles for Docker images for other various uses
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Dockerfiles for Docker images that make other useful containers.
Associated Docker hub images and github repos
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Youtube-DL:
[](https://microbadger.com/images/fomightez/youtubedl "Get your own version badge on microbadger.com")[](https://microbadger.com/images/fomightez/youtubedl "Get your own image badge on microbadger.com")
https://hub.docker.com/r/fomightez/youtubedl/
https://github.com/fomightez/youtube-dl_docker
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