https://github.com/fomightez/humap2-binder

Using data from hu.MAP 2.0 with the convenience of Python and Jupyter.
https://github.com/fomightez/humap2-binder

Last synced: about 1 month ago
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Using data from hu.MAP 2.0 with the convenience of Python and Jupyter.

• Host: GitHub
• URL: https://github.com/fomightez/humap2-binder
• Owner: fomightez
• License: mit
• Created: 2024-11-05T17:17:09.000Z (about 2 months ago)
• Default Branch: main
• Last Pushed: 2024-11-22T22:11:37.000Z (about 1 month ago)
• Last Synced: 2024-11-22T23:19:29.819Z (about 1 month ago)
• Language: Jupyter Notebook
• Size: 902 KB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# humap2-binder

Analysis of hu.MAP 2.0-related data via active Jupyter sessions provided via MyBinder.org. Adapt the demonstrations to analyze your favorite proteins and create reports.

[![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/fomightez/humap2-binder/main?urlpath=%2Flab%2Ftree%2Findex.ipynb)

*tl;dr:*  

Click any `launch binder` badge on this page to use the demonstrations inside your browser.

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***humap2-binder:  Jupyter notebook environment for analysis of hu.MAP 2.0-related data.***

A launchable, working Jupyter-based environment that has a collection of demonstrations of analysis of hu.MAP 2.0-related data served via MyBinder.org.

You can also easily adapt the demonstrations to analyze your favorite proteins or create reports featuring your proteins of interest.

Meant to be self-contained and ready-to-go. No installations or copying of notebooks is necessary if `launch binder` is clicked. Everything will just work. Of course, static versions of the notebooks can also be used. I recommend rendering the static versions by placing the URLs into the [nbviewer](https://nbviewer.jupyter.org/). The views provided by [nbviewer](https://nbviewer.jupyter.org/) look best and Github's rendering often times out (your mileage may vary).

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#### Related

[My humap3-binder repository](https://github.com/fomightez/humap3-binder) is where most of the related effort takes place, and will continue to take place, as it is where I started adding programmatic access to the hu.MAP-related data, and so be sure to see there for more beyond what you find here. Importantly, I realized that myself and others might be curious how the author-provided data has changed between the two versions, and so this repository serves as a foundation for wrangling the hu.MAP 2.0-related data. It will parallel the current state of [the humap3-binder repository](https://github.com/fomightez/humap3-binder), although that one is expected to expand soon using the foundation provided here to allow comparison between the results.