https://github.com/francesco-mannella/selection-of-cortical-dynamics-for-motor-behaviour

Source code of the simulations in the paper "Selection of cortical dynamics for motor behaviour by the basal ganglia."
https://github.com/francesco-mannella/selection-of-cortical-dynamics-for-motor-behaviour

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Source code of the simulations in the paper "Selection of cortical dynamics for motor behaviour by the basal ganglia."

• Host: GitHub
• URL: https://github.com/francesco-mannella/selection-of-cortical-dynamics-for-motor-behaviour
• Owner: francesco-mannella
• License: gpl-3.0
• Created: 2016-02-20T17:11:53.000Z (almost 9 years ago)
• Default Branch: master
• Last Pushed: 2021-12-03T10:45:48.000Z (about 3 years ago)
• Last Synced: 2024-11-07T09:23:57.452Z (2 months ago)
• Language: C++
• Homepage: http://goo.gl/mp1Pb8
• Size: 12.8 MB
• Stars: 2
• Watchers: 3
• Forks: 2
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: COPYING

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# Selection-of-Cortical-Dynamics-for-Motor-Behaviour

This code implements the simulations described in the paper:

```

Selection of cortical dynamics for motor behaviour by the basal ganglia.

Mannella F, Baldassarre G.

Biol Cybern. 2015 Dec;109(6):575-95. doi: 10.1007/s00422-015-0662-6. Epub 2015 Nov 4.

PMID: 26537483 

```

You have open access to the paper at this [link](http://link.springer.com/article/10.1007%2Fs00422-015-0662-6).

## Simulations

The source code compiles three different simulations:

* Simulation 1 (simulation_loop_model_single_shape): a simulation of LOOP_MODEL learning to reproduce three different shapes, described in section 5.1 of the paper, and shown in the supplementary material 1.

* Simulation 2 (simulation_loop_model_multiple_shape): a simulation of LOOP_MODEL learning to generalize three different shapes over different scales or positions, also described in section 5.1 of the paper.

* Simulation 2 (simulation_loop_model_hand): a simulation of LOOP_MODEL learning to select and control three different positions in a 3D 20-DoF hand, described in section 5.2 of the paper and shown in  the supplementary material 2.

## Dependencies

This software depends on:

* The [Armadillo C++ linear algebra library](http://arma.sourceforge.net/docs.html)

It also requires

* The modules [regex](http://www.boost.org/doc/libs/1_60_0/libs/regex/doc/html/index.html), [system](http://www.boost.org/doc/libs/1_60_0/libs/system/doc/index.html), and [Filesystem](http://www.boost.org/doc/libs/1_60_0/libs/system/doc/index.html) from the [Boost C++ Libraries](http://www.boost.org/)

You finally need the [CENSLIB - Computational Embodied Neuroscience Simulation Library](http://censlib.sourceforge.net/) to compile simulation 3  

## Installation

* Download the zipped package from [here](https://github.com/francesco-mannella/Selection-of-Cortical-Dynamics-for-Motor-Behaviour/archive/master.zip)

* run these lines in the shell:

```

unzip Selection-of-Cortical-Dynamics-for-Motor-Behaviour.zip

cd Selection-of-Cortical-Dynamics-for-Motor-Behaviour

mkdir build && cd build

cmake .. && make -j 8 all

```