https://github.com/franciscozorrilla/metaGEM

:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
https://github.com/franciscozorrilla/metaGEM

bioinformatics computational-biology flux-balance-analysis genome-scale-metabolic-model gut-microbiome mags metabolic-modeling metabolic-models metabolism metagenome-assembled-genomes metagenomics microbial-ecology microbiome snakemake systems-biology

Last synced: about 2 months ago
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:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

• Host: GitHub
• URL: https://github.com/franciscozorrilla/metaGEM
• Owner: franciscozorrilla
• License: mit
• Created: 2018-06-14T15:26:05.000Z (over 6 years ago)
• Default Branch: master
• Last Pushed: 2024-07-27T16:02:11.000Z (5 months ago)
• Last Synced: 2024-08-01T18:33:50.070Z (5 months ago)
• Topics: bioinformatics, computational-biology, flux-balance-analysis, genome-scale-metabolic-model, gut-microbiome, mags, metabolic-modeling, metabolic-models, metabolism, metagenome-assembled-genomes, metagenomics, microbial-ecology, microbiome, snakemake, systems-biology
• Language: Python
• Homepage: https://franciscozorrilla.github.io/metaGEM/
• Size: 262 MB
• Stars: 178
• Watchers: 5
• Forks: 39
• Open Issues: 15
• Metadata Files:
  • Readme: README.md
  • License: LICENSE
  • Code of conduct: CODE_OF_CONDUCT.md
  • Citation: CITATION.bib

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