https://github.com/g2nb/igv-jupyter

Extension for Jupyter which integrates igv.js
https://github.com/g2nb/igv-jupyter

jupyter labextension visualization

Last synced: 5 days ago
JSON representation

Extension for Jupyter which integrates igv.js

• Host: GitHub
• URL: https://github.com/g2nb/igv-jupyter
• Owner: g2nb
• License: mit
• Created: 2016-07-21T18:44:38.000Z (over 8 years ago)
• Default Branch: master
• Last Pushed: 2023-01-03T21:53:51.000Z (about 2 years ago)
• Last Synced: 2024-04-25T18:21:25.134Z (9 months ago)
• Topics: jupyter, labextension, visualization
• Language: JavaScript
• Homepage:
• Size: 4.36 MB
• Stars: 154
• Watchers: 14
• Forks: 14
• Open Issues: 1
• Metadata Files:
  • Readme: README.md
  • License: LICENSE.md

Awesome Lists containing this project

• awesome-jupyter-resources - GitHub

README

        
# igv Jupyter Extension

[![Binder](https://beta.mybinder.org/badge.svg)](https://mybinder.org/v2/gh/g2nb/igv-jupyter/master)

=======

igv-jupyter is tool for [JupyterLab](http://jupyter.org/) which wraps [igv.js](https://github.com/igvteam/igv.js) by way of [igv-notebook](https://github.com/igvteam/igv-notebook), and

which integrates with [g2nb](https://github.com/g2nb/g2nb). With this tool you can render IGV in a cell and call its API

from a user-friendly web form in the notebook. Track data can be loaded from local or remote URLs, or supplied directly.

For programmatic access to igv.js in a Jupyter notebook, see [igv-notebook](https://github.com/igvteam/igv-notebook).

## Installation

Requirements:

* python >= 3.6.4

* jupyterlab >= 3.0

```bash

pip install igv-jupyter

```