https://github.com/gagniuc/3d-objective-digital-stains
A 3D Objective Digital Stain is able to show the information structure of a DNA or RNA sequence in a graphical manner. In this case, the ODS is computed using the local frequency of the symbols from a sliding window. In the 3D version, the overlapping values (similar sliding windows) are represented by a gradient from black to red.
https://github.com/gagniuc/3d-objective-digital-stains
3d dna information ods representation rna structure
Last synced: 8 months ago
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A 3D Objective Digital Stain is able to show the information structure of a DNA or RNA sequence in a graphical manner. In this case, the ODS is computed using the local frequency of the symbols from a sliding window. In the 3D version, the overlapping values (similar sliding windows) are represented by a gradient from black to red.
- Host: GitHub
- URL: https://github.com/gagniuc/3d-objective-digital-stains
- Owner: Gagniuc
- License: mit
- Created: 2021-11-15T18:04:05.000Z (almost 4 years ago)
- Default Branch: main
- Last Pushed: 2022-03-21T09:28:29.000Z (over 3 years ago)
- Last Synced: 2025-01-15T07:32:10.842Z (9 months ago)
- Topics: 3d, dna, information, ods, representation, rna, structure
- Language: HTML
- Homepage:
- Size: 19.5 KB
- Stars: 2
- Watchers: 1
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- Funding: .github/FUNDING.yml
- License: LICENSE.md
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README
# 3D Objective Digital Stains
A 3D Objective Digital Stain is able to show the information structure of a DNA or RNA sequence in a graphical manner. In this case, the ODS is computed using the local frequency of the symbols from a sliding window. In the 3D version, the overlapping values (similar sliding windows) are represented by a gradient from black to red.
# Live demo
https://gagniuc.github.io/3D-Objective-Digital-Stains/
# Screenshot
# References
- Paul A. Gagniuc. Algorithms in Bioinformatics: Theory and Implementation. John Wiley & Sons, Hoboken, NJ, USA, 2021, ISBN: 9781119697961.