https://github.com/gagniuc/genomin
Genomin is an implementation for large-scale genomic analysis. It is made in Visual Basic 6.0 (VB6). It uses the seek method to generate buffers from large FASTA files (over 8 Gb).
https://github.com/gagniuc/genomin
bioinformatics fasta files genetics genomics genomin vb6
Last synced: 8 months ago
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Genomin is an implementation for large-scale genomic analysis. It is made in Visual Basic 6.0 (VB6). It uses the seek method to generate buffers from large FASTA files (over 8 Gb).
- Host: GitHub
- URL: https://github.com/gagniuc/genomin
- Owner: Gagniuc
- License: mit
- Created: 2021-11-03T17:47:23.000Z (almost 4 years ago)
- Default Branch: main
- Last Pushed: 2022-11-17T07:13:25.000Z (almost 3 years ago)
- Last Synced: 2025-01-15T07:31:59.224Z (9 months ago)
- Topics: bioinformatics, fasta, files, genetics, genomics, genomin, vb6
- Language: Visual Basic 6.0
- Homepage:
- Size: 4.17 MB
- Stars: 3
- Watchers: 2
- Forks: 3
- Open Issues: 0
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Metadata Files:
- Readme: README.md
- Funding: .github/FUNDING.yml
- License: LICENSE.md
Awesome Lists containing this project
README
# :dna: Genomin
Genomin is an implementation for large-scale genomic analysis. It is made in Visual Basic 6.0 (VB6). It uses the seek method to generate buffers from large FASTA files (over 8 Gb). The screenshot shows the analysis of a ~ 250 MB FASTA file (representing chromosome 1 from Homo Sapiens). For big FASTA files, goto:
1) [NCBI - Homo sapiens (human)](https://www.ncbi.nlm.nih.gov/genome?term=human&cmd=DetailsSearch)
2) [NCBI Genome Reference Consortium Human Build 38 patch release 14 (GRCh38.p14)](https://www.ncbi.nlm.nih.gov/assembly/GCA_000001405.29)
Note: Files compatible with Genomin show the following extensions: .fna or .fa or .fasta or .fas.
# References
- Paul Gagniuc et al. Genomin: a software framework for reading genomic signals. Proc. Rom. Acad., Series B, 13(1):53–62, 2011.