https://github.com/galaxyproject/galaxy

Data intensive science for everyone.
https://github.com/galaxyproject/galaxy

bioinformatics dna genomics hacktoberfest ngs pipeline science sequencing usegalaxy workflow workflow-engine

Last synced: 5 days ago
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Data intensive science for everyone.

• Host: GitHub
• URL: https://github.com/galaxyproject/galaxy
• Owner: galaxyproject
• License: other
• Created: 2015-02-23T14:18:06.000Z (almost 10 years ago)
• Default Branch: dev
• Last Pushed: 2024-10-29T06:57:12.000Z (2 months ago)
• Last Synced: 2024-10-29T11:13:09.560Z (2 months ago)
• Topics: bioinformatics, dna, genomics, hacktoberfest, ngs, pipeline, science, sequencing, usegalaxy, workflow, workflow-engine
• Language: Python
• Homepage: https://galaxyproject.org
• Size: 637 MB
• Stars: 1,389
• Watchers: 71
• Forks: 1,002
• Open Issues: 2,378
• Metadata Files:
  • Readme: README.rst
  • Contributing: CONTRIBUTING.md
  • License: LICENSE.txt
  • Code of conduct: CODE_OF_CONDUCT.md
  • Citation: CITATION
  • Security: SECURITY.md

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README

        
.. figure:: https://galaxyproject.org/images/galaxy-logos/galaxy_project_logo.jpg

   :alt: Galaxy Logo

The latest information about Galaxy can be found on the `Galaxy Community Hub `__.

Community support is available at `Galaxy Help `__.

.. image:: https://img.shields.io/badge/chat-gitter-blue.svg

    :target: https://gitter.im/galaxyproject/Lobby

    :alt: Chat on gitter

.. image:: https://img.shields.io/badge/chat-irc.freenode.net%23galaxyproject-blue.svg

    :target: https://webchat.freenode.net/?channels=galaxyproject

    :alt: Chat on irc

.. image:: https://img.shields.io/badge/release-documentation-blue.svg

    :target: https://docs.galaxyproject.org/en/master/

    :alt: Release Documentation

.. image:: https://travis-ci.org/galaxyproject/galaxy.svg?branch=dev

    :target: https://travis-ci.org/galaxyproject/galaxy

    :alt: Inspect the test results

Galaxy Quickstart

=================

Galaxy requires Python 3.8 or higher. To check your Python version, run:

.. code:: console

    $ python -V

    Python 3.8.18

Start Galaxy:

.. code:: console

    $ sh run.sh

Once Galaxy completes startup, you should be able to view Galaxy in your

browser at: http://localhost:8080

For more installation details please see: https://getgalaxy.org/

Documentation is available at: https://docs.galaxyproject.org/

Tutorials on how to use Galaxy, perform scientific analyses with it, develop Galaxy and its tools, and admin a Galaxy server are at: https://training.galaxyproject.org/

Tools

=====

Tools can be either installed from the Tool Shed or added manually.

For details please see the `tutorial `__.

Note that not all dependencies for the tools provided in the

``tool_conf.xml.sample`` are included. To install them please visit

"Manage dependencies" in the admin interface.

Issues and Galaxy Development

=============================

Please see `CONTRIBUTING.md `_ .