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https://github.com/garrettmflynn/anywave_hed
An AnyWave plugin to place HED tags into the BIDS format
https://github.com/garrettmflynn/anywave_hed
Last synced: about 2 months ago
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An AnyWave plugin to place HED tags into the BIDS format
- Host: GitHub
- URL: https://github.com/garrettmflynn/anywave_hed
- Owner: garrettmflynn
- License: mit
- Created: 2022-07-19T20:58:43.000Z (over 2 years ago)
- Default Branch: main
- Last Pushed: 2022-11-17T18:12:38.000Z (about 2 years ago)
- Last Synced: 2024-04-23T23:44:52.700Z (9 months ago)
- Language: Python
- Size: 25.4 MB
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
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README
# anywave_hed
An AnyWave plugin to place HED tags into the BIDS format
## Description
This plugin converts AnyWave's native .mrk files to BIDS _events.tsv files after closing the program.
## How to Install
> A Python plugin is a folder located in the user home dir.
> - **Windows:** Documents\AnyWave\Plugins\Python
> - **Linux:** /home/username/AnyWave/Plugins/Python
> - **MacOS:** /users/username/AnyWave/Plugins/Python
Once added to the correct folder, the plugin will show up under the Processes/Markers/Save as HED Tags in BIDS.
### Creating and Linking a Virtual Environment
1. Create the virtual environment
```
Python3 -m venv c:\dev\venv\anywave
```
2. Activate the virtual environment
```
c:\dev\venv\anywave\Scripts\activate
```
3. Install the AnyWave Plugin API to the environment
```
pip install anywave-plugin-api
```
4. Link the virtual environment in the AnyWave preferences
## Key Features
- The plugin will automatically sync the _events.tsv file to the .mrk file in the associated `derivatives/anywave` folder.
- The plugin will find automated artifact annotations (.artf) next to the EEG-BIDS .edf file and add them to both the .mrk and the _events.tsv file.
## Notes
### Debug Mode
https://gitlab-dynamap.timone.univ-amu.fr/anywave/anywave/-/wikis/Py_debug
### Plugin Basics
https://gitlab-dynamap.timone.univ-amu.fr/anywave/anywave/-/wikis/Python_plugins