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https://github.com/gauravcodepro/fungal-its-coverage-calculator
I coded this function to estimate the fraction of the ITS predictions from the fungal metagenomics and it estimates by taking into account the sequence length and also the ITS1 and ITS2 start and stop coordinates. Provided a keyworded argument, it estimates the coverage accordingly
https://github.com/gauravcodepro/fungal-its-coverage-calculator
bioinformatics fungal-genomes fungal-its fungal-metagenomics fungalgenomics metagenomics metagenomics-data
Last synced: about 1 month ago
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I coded this function to estimate the fraction of the ITS predictions from the fungal metagenomics and it estimates by taking into account the sequence length and also the ITS1 and ITS2 start and stop coordinates. Provided a keyworded argument, it estimates the coverage accordingly
- Host: GitHub
- URL: https://github.com/gauravcodepro/fungal-its-coverage-calculator
- Owner: gauravcodepro
- License: mit
- Created: 2023-08-02T09:18:33.000Z (over 1 year ago)
- Default Branch: main
- Last Pushed: 2024-05-02T09:05:15.000Z (8 months ago)
- Last Synced: 2024-05-07T19:51:16.788Z (8 months ago)
- Topics: bioinformatics, fungal-genomes, fungal-its, fungal-metagenomics, fungalgenomics, metagenomics, metagenomics-data
- Language: Python
- Homepage:
- Size: 42 KB
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
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Metadata Files:
- Readme: README.md
- License: LICENSE