https://github.com/gauravcodepro/pacbio-nanopore-repeat-coverage
a long read repeat coverage calculator,given an long read file before assembly either direct from the sequencing runs or after the cleaning, it calculates the total amount of the repeat stretches present in the sequencing reads and you can plot them before assembly
https://github.com/gauravcodepro/pacbio-nanopore-repeat-coverage
bioinformatics bioinformatics-algorithms bioinformatics-tool longread oxford-nanopore pacbio pacbio-sequencing sequencing-coverage sequencing-data sequencing-error
Last synced: 3 months ago
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a long read repeat coverage calculator,given an long read file before assembly either direct from the sequencing runs or after the cleaning, it calculates the total amount of the repeat stretches present in the sequencing reads and you can plot them before assembly
- Host: GitHub
- URL: https://github.com/gauravcodepro/pacbio-nanopore-repeat-coverage
- Owner: gauravcodepro
- License: mit
- Created: 2023-08-18T10:39:07.000Z (almost 2 years ago)
- Default Branch: main
- Last Pushed: 2024-05-02T08:55:07.000Z (about 1 year ago)
- Last Synced: 2024-05-07T19:51:27.855Z (about 1 year ago)
- Topics: bioinformatics, bioinformatics-algorithms, bioinformatics-tool, longread, oxford-nanopore, pacbio, pacbio-sequencing, sequencing-coverage, sequencing-data, sequencing-error
- Language: Python
- Homepage:
- Size: 18.6 KB
- Stars: 1
- Watchers: 1
- Forks: 0
- Open Issues: 0
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Metadata Files:
- Readme: README.md
- License: LICENSE