https://github.com/gauravcodepro/pangenome-single-copy-gene
a single copy gene analysis pangenome which allows for the orthology already computed and allows for the alignment and phylogeny building using three alignment approaches and also allows for the GTRCAT and GTRGAMA model with 1000 bootstrap. To check the file conversion it iterates the first files at the start and see if the number matches
https://github.com/gauravcodepro/pangenome-single-copy-gene
bioinformatics bioinformatics-analysis pangenome pangenome-inference pangenome-pipeline
Last synced: 2 months ago
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a single copy gene analysis pangenome which allows for the orthology already computed and allows for the alignment and phylogeny building using three alignment approaches and also allows for the GTRCAT and GTRGAMA model with 1000 bootstrap. To check the file conversion it iterates the first files at the start and see if the number matches
- Host: GitHub
- URL: https://github.com/gauravcodepro/pangenome-single-copy-gene
- Owner: gauravcodepro
- License: mit
- Created: 2024-02-16T10:47:54.000Z (over 1 year ago)
- Default Branch: main
- Last Pushed: 2024-05-02T09:47:40.000Z (over 1 year ago)
- Last Synced: 2024-05-07T19:51:26.058Z (over 1 year ago)
- Topics: bioinformatics, bioinformatics-analysis, pangenome, pangenome-inference, pangenome-pipeline
- Language: Shell
- Homepage:
- Size: 18.6 KB
- Stars: 1
- Watchers: 1
- Forks: 0
- Open Issues: 0
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Metadata Files:
- Readme: README.md
- License: LICENSE