https://github.com/gdamaskos/flask_with_sql_connector
LAHMA stands for Local Annotation of Homology Matched Aminoacids. LAHMA is a web application that facilitates protein crystallography research. In this repository you can find the core of the application.
https://github.com/gdamaskos/flask_with_sql_connector
flask mysqlconnector
Last synced: about 1 month ago
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LAHMA stands for Local Annotation of Homology Matched Aminoacids. LAHMA is a web application that facilitates protein crystallography research. In this repository you can find the core of the application.
- Host: GitHub
- URL: https://github.com/gdamaskos/flask_with_sql_connector
- Owner: gdamaskos
- Created: 2021-04-28T08:44:14.000Z (about 5 years ago)
- Default Branch: main
- Last Pushed: 2021-06-10T16:40:35.000Z (about 5 years ago)
- Last Synced: 2025-03-16T21:19:03.242Z (over 1 year ago)
- Topics: flask, mysqlconnector
- Language: CSS
- Homepage: https://lahma.pdb-redo.eu
- Size: 1.63 MB
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
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README
# LAHMA
LAHMA stands for Local Annotation of Homology Matched Aminoacids.
LAHMA is a web application that facilitates protein crystallography research. In this repository you can find the core of the application.
You can visit the complete site https://lahma.pdb-redo.eu
Basic web software used in this project:
* Flask
* JQuery
* AJAX
* Google Material Design
* Bootstrap
* SQL
# Installation for development on your computer
## Prerequisites
First of all, you must be running a Debian Operating System like Ubuntu.
The following prerequisites are required and must be installed manually if not present:
* git (e.g. `apt-get install git` on a Debian-like OS)
* python 3.8, follow this tutorial to prepare https://www.digitalocean.com/community/tutorials/how-to-install-python-3-and-set-up-a-programming-environment-on-ubuntu-20-04-quickstart
## Steps for setting up the development environment
Clone the repository from github and go to the ccd directory:
git clone https://github.com/gdamaskos/flask_with_sql_connector.git
cd flask_with_sql_connector
Install Mariadb following this tutorial https://www.digitalocean.com/community/tutorials/how-to-install-mariadb-on-ubuntu-20-04
Log in the database as root or administrator and create a database:
$ mysql -u admin -p
mysql> CREATE DATABASE LahmaDB1;
mysql> exit
Import the demo databse provided in the repository:
mysql -u admin -p LahmaDB1 < data/LahmaDB1.sql
Create a python3.8 virtual environment containing the dependences found in requirements.txt:
python3 -m venv ~/virtual_environments/lahma
source ~/virtual_environments/lahma/bin/activate
Install python dependencies:
pip install wheel
pip install -r requirements.txt
Modify the settings in `config/lahma_settings.example` to your needs and rename the
file to `config/lahma_settings.cfg`. Make sure you generate a new secret key,
and fill in a valid email. Make sure you put the right credentils to access the database (IP, Username, Password, Database_name).
The secret key can be generated using a python shell, for example:
$ python
>>> import os
>>> os.urandom(96)
Start the app!
./run.sh
Visit the address:
http://localhost:8080