https://github.com/gdkrmr/dimRed

A Framework for Dimensionality Reduction in R
https://github.com/gdkrmr/dimRed

dimensionality-reduction framework high-dimensional-data manifold-learning quality-control r visualization

Last synced: 3 months ago
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A Framework for Dimensionality Reduction in R

• Host: GitHub
• URL: https://github.com/gdkrmr/dimRed
• Owner: gdkrmr
• License: gpl-3.0
• Created: 2016-10-14T09:25:34.000Z (about 8 years ago)
• Default Branch: master
• Last Pushed: 2023-03-21T13:05:47.000Z (over 1 year ago)
• Last Synced: 2024-05-21T02:53:06.430Z (6 months ago)
• Topics: dimensionality-reduction, framework, high-dimensional-data, manifold-learning, quality-control, r, visualization
• Language: R
• Homepage: https://www.guido-kraemer.com/software/dimred/
• Size: 56.7 MB
• Stars: 72
• Watchers: 7
• Forks: 15
• Open Issues: 8
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# dimRed

[![docs](https://img.shields.io/badge/docs-dev-blue.svg)](https://dimred.guido-kraemer.com)

[![R](https://github.com/gdkrmr/dimRed/actions/workflows/r.yml/badge.svg)](https://github.com/gdkrmr/dimRed/actions/workflows/r.yml)

[![codecov](https://codecov.io/gh/gdkrmr/dimRed/branch/master/graph/badge.svg?token=voiiWocTst)](https://codecov.io/gh/gdkrmr/dimRed)

[![CRAN\_Status\_Badge](https://www.r-pkg.org/badges/version/dimRed)](https://cran.r-project.org/package=dimRed)

[![DOI](https://zenodo.org/badge/70895041.svg)](https://zenodo.org/badge/latestdoi/70895041)

A Framework for Dimensionality Reduction for the R language.

A collection of dimensionality reduction

techniques from R packages and provides a common

interface for calling the methods.

## Installing

Install the latest development version from Github:

```R

## install.packages("devtools")

devtools::install_github("gdkrmr/dimRed")

```

Install the latest stable version from CRAN:

```R

install.packages("dimRed")

```

Load it:

```R

library(dimRed)

```

Install dependencies:

```R

## To install all dependencies:

dimRed::installSuggests()

```

## Citing

The corresponding publication can be found

[here](https://journal.r-project.org/archive/2018/RJ-2018-039/index.html "dimRed

and coRanking - Unifying Dimensionality Reduction in R"), please cite if you use

`dimRed`:

```bibtex

@article{RJ-2018-039,

  author = {Guido Kraemer and Markus Reichstein and Miguel D. Mahecha},

  title = {{dimRed and coRanking---Unifying Dimensionality Reduction in R}},

  year = {2018},

  journal = {{The R Journal}},

  url = {https://journal.r-project.org/archive/2018/RJ-2018-039/index.html},

  pages = {342--358},

  volume = {10},

  number = {1}

}

```