https://github.com/gear-genomics/tracy

Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files
https://github.com/gear-genomics/tracy

alignment chromatogram crispr-analysis crispr-cas9 genetic-engineering indel indel-discovery pcr pcr-products sanger-chromatograms sanger-sequencing sanger-trace-alignment sequencing tracy variant-calling

Last synced: 25 days ago
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Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files

• Host: GitHub
• URL: https://github.com/gear-genomics/tracy
• Owner: gear-genomics
• License: bsd-3-clause
• Created: 2018-06-14T09:54:24.000Z (over 7 years ago)
• Default Branch: main
• Last Pushed: 2025-12-02T10:06:38.000Z (2 months ago)
• Last Synced: 2025-12-05T06:33:01.178Z (2 months ago)
• Topics: alignment, chromatogram, crispr-analysis, crispr-cas9, genetic-engineering, indel, indel-discovery, pcr, pcr-products, sanger-chromatograms, sanger-sequencing, sanger-trace-alignment, sequencing, tracy, variant-calling
• Language: C++
• Homepage: https://www.gear-genomics.com/
• Size: 3.16 MB
• Stars: 118
• Watchers: 5
• Forks: 22
• Open Issues: 12
• Metadata Files:
  • Readme: README.md
  • Contributing: CONTRIBUTING.md
  • License: LICENSE
  • Authors: AUTHORS

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README

          
[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat-square)](http://bioconda.github.io/recipes/tracy/README.html)

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## Tracy: basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files

Tracy is available as a [Bioconda package](https://anaconda.org/bioconda/tracy), as a pre-compiled statically linked binary from [Tracy's github release page](https://github.com/gear-genomics/tracy/releases), as a singularity container [SIF file](https://github.com/gear-genomics/tracy/releases) or as a [Docker container](https://hub.docker.com/r/geargenomics/tracy/).

[Source Code](https://github.com/gear-genomics/tracy/)

[Web Applications](https://www.gear-genomics.com)

[Documentation](https://www.gear-genomics.com/docs/tracy/)

## Citation

Rausch, T., Fritz, M.H., Untergasser, A. and Benes, V.         

Tracy: basecalling, alignment, assembly and deconvolution of sanger chromatogram trace files.             

BMC Genomics 21, 230 (2020).             

[https://doi.org/10.1186/s12864-020-6635-8](https://doi.org/10.1186/s12864-020-6635-8)

## License

Tracy is distributed under the BSD 3-Clause license. Consult the accompanying [LICENSE](https://github.com/gear-genomics/tracy/blob/master/LICENSE) file for more details.