Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
https://github.com/gedankenstuecke/genotype_relatedness
https://github.com/gedankenstuecke/genotype_relatedness
Last synced: 8 days ago
JSON representation
- Host: GitHub
- URL: https://github.com/gedankenstuecke/genotype_relatedness
- Owner: gedankenstuecke
- Created: 2016-08-08T19:19:55.000Z (over 8 years ago)
- Default Branch: master
- Last Pushed: 2016-08-08T19:56:53.000Z (over 8 years ago)
- Last Synced: 2024-11-13T14:25:38.112Z (2 months ago)
- Language: Python
- Size: 2.93 KB
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
Awesome Lists containing this project
README
# How related are genotypes?
A small experiment to see how many SNPs one does need to look at to see how related two data sets are
Just run `run_all.sh` to download all of *openSNPs* genotypes, unzip them, filter some (un)interesting ones and compare a random selection of these.
In the end you'll have a PDF that has a plot comparing related (aka ± identical) genotypes and probably unrelated ones.
## requirements
- *python 2.X*
- *R*
- *ggplot2*