https://github.com/gedankenstuecke/opensnp_freqs

https://github.com/gedankenstuecke/opensnp_freqs

Last synced: 8 days ago
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• Host: GitHub
• URL: https://github.com/gedankenstuecke/opensnp_freqs
• Owner: gedankenstuecke
• Created: 2018-04-04T02:56:51.000Z (almost 7 years ago)
• Default Branch: master
• Last Pushed: 2018-04-04T03:01:09.000Z (almost 7 years ago)
• Last Synced: 2024-11-13T14:25:21.742Z (2 months ago)
• Language: R
• Size: 95.7 MB
• Stars: 0
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
# Missed SNP calls according to openSNP data

I dumped all the SNP frequencies from the openSNP database into `snp_stats.txt.gz` in the most ridiculous way using the Ruby shell.

`analyze_freqs.py` will transform the unzipped file into a proper CSV (here `frequencies_missing.csv`).

This one was then quickly plotted with `ggplot` in `plot.R`