https://github.com/genentech/polygraph

Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of regulatory elements.
https://github.com/genentech/polygraph

Last synced: 6 days ago
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Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of regulatory elements.

• Host: GitHub
• URL: https://github.com/genentech/polygraph
• Owner: Genentech
• License: mit
• Created: 2023-10-02T02:37:54.000Z (over 1 year ago)
• Default Branch: main
• Last Pushed: 2025-01-09T06:05:46.000Z (3 months ago)
• Last Synced: 2025-03-27T14:47:53.157Z (24 days ago)
• Language: Jupyter Notebook
• Homepage:
• Size: 27.5 MB
• Stars: 28
• Watchers: 7
• Forks: 0
• Open Issues: 1
• Metadata Files:
  • Readme: README.md
  • Contributing: docs/contributing.md
  • License: LICENSE.txt
  • Authors: AUTHORS.md

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• top-pharma50 - **genentech/polygraph** - 04-11 21:51:25 | (Ranked by starred repositories)
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README

        
# Polygraph: A Software Framework for the Systematic Assessment of Synthetic Regulatory DNA Elements

This package evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of regulatory elements.

![polygraph_schematic](https://github.com/Genentech/polygraph/assets/11052222/59897763-e064-436f-85bc-c205d9cb4b4a)

## Documentation

[Documentation](https://genentech.github.io/polygraph)

## Tutorials

[Tutorials](tutorials)

## Preprint

[bioRxiv](https://www.biorxiv.org/content/10.1101/2023.11.27.568764)

## Installation

```

git clone https://github.com/Genentech/polygraph.git

cd polygraph

pip install .

```