https://github.com/genepattern/hisat2.aligner

Repo for the dockerized HISAT2.aligner module
https://github.com/genepattern/hisat2.aligner

bioinformatics genepattern-module rna-seq

Last synced: about 2 months ago
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Repo for the dockerized HISAT2.aligner module

• Host: GitHub
• URL: https://github.com/genepattern/hisat2.aligner
• Owner: genepattern
• License: bsd-3-clause
• Created: 2018-03-26T18:10:22.000Z (over 6 years ago)
• Default Branch: develop
• Last Pushed: 2024-01-04T19:06:41.000Z (12 months ago)
• Last Synced: 2024-01-04T20:24:37.458Z (12 months ago)
• Topics: bioinformatics, genepattern-module, rna-seq
• Language: Python
• Homepage:
• Size: 1.13 MB
• Stars: 0
• Watchers: 7
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# HISAT2.aligner

HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes (as well as to a single reference genome). Please refer to https://ccb.jhu.edu/software/hisat2/index.shtml for details of the algorithm.