https://github.com/genepattern/single.cell.ssgsea

The method for this module is still under active development, not finalized, and should not be used.
https://github.com/genepattern/single.cell.ssgsea

genepattern gp-module gsea scgsea ssgsea

Last synced: 3 months ago
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The method for this module is still under active development, not finalized, and should not be used.

• Host: GitHub
• URL: https://github.com/genepattern/single.cell.ssgsea
• Owner: genepattern
• License: other
• Created: 2023-05-23T20:05:39.000Z (about 2 years ago)
• Default Branch: develop
• Last Pushed: 2025-03-03T20:11:15.000Z (3 months ago)
• Last Synced: 2025-03-09T21:03:13.214Z (3 months ago)
• Topics: genepattern, gp-module, gsea, scgsea, ssgsea
• Language: Python
• Homepage:
• Size: 1.31 MB
• Stars: 0
• Watchers: 0
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# Single Cell ssGSEA

**Description**: Single Cell ssGSEA (sc_ssGSEA) is an extension of ssGSEA tailored for single-cell data analysis. It addresses the challenge of sparsity by employing a normalization method and scoring metric chosen to minimize any variability. By utilizing sc_ssGSEA, scientists can explore and interpret pathway activity and functional alterations within heterogeneous populations of cells.

**Authors**: John Jun, Alexander T. Wenzel; UCSD - Mesirov Lab, UCSD

**Contact**: [Forum Link](https://groups.google.com/forum/?utm_medium=email&utm_source=footer#!forum/genepattern-help)

See [documentation](https://github.com/genepattern/scGSEA/documentation.md) for more details.