https://github.com/genepattern/stream.detectlabelspecificmarkers

STREAM can be used to detect cell population-specific markers. This is similar to leaf branch marker gene detection. Here instead of comparing the gene expression values between leaf branches, we compare the gene expression values between cell populations
https://github.com/genepattern/stream.detectlabelspecificmarkers

genepattern-module rna-seq single-cell

Last synced: 4 months ago
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STREAM can be used to detect cell population-specific markers. This is similar to leaf branch marker gene detection. Here instead of comparing the gene expression values between leaf branches, we compare the gene expression values between cell populations

• Host: GitHub
• URL: https://github.com/genepattern/stream.detectlabelspecificmarkers
• Owner: genepattern
• License: bsd-3-clause
• Created: 2019-11-18T22:12:19.000Z (over 6 years ago)
• Default Branch: master
• Last Pushed: 2020-01-30T16:52:03.000Z (over 6 years ago)
• Last Synced: 2024-12-31T03:14:08.188Z (over 1 year ago)
• Topics: genepattern-module, rna-seq, single-cell
• Language: Python
• Size: 28 MB
• Stars: 0
• Watchers: 8
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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# STREAM.DetectLabelSpecificMarkers

STREAM can be used to detect cell population-specific markers. This is similar to leaf branch marker gene detection. Here instead of comparing the gene expression values between leaf branches, we compare the gene expression values between cell populations

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