https://github.com/genepattern/stream.dimensionreduction

https://github.com/genepattern/stream.dimensionreduction

genepattern-module rna-seq single-cell

Last synced: 4 months ago
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• Host: GitHub
• URL: https://github.com/genepattern/stream.dimensionreduction
• Owner: genepattern
• License: bsd-3-clause
• Created: 2019-08-28T20:52:46.000Z (almost 7 years ago)
• Default Branch: master
• Last Pushed: 2022-12-08T22:42:41.000Z (over 3 years ago)
• Last Synced: 2024-12-31T03:13:35.671Z (over 1 year ago)
• Topics: genepattern-module, rna-seq, single-cell
• Language: Python
• Size: 26.7 MB
• Stars: 0
• Watchers: 7
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
# STREAM.DimensionReduction

Perform dimension reduction on the dataset to make it easier to reliably assess similarity or distances between cells. Starting from the genes selected in the STREAM.FeatureSelection module, we project cells to a lower dimensional space using a non-linear dimensionality reduction method.

[Full Documentation](https://beta.genepattern.org/gp/getTaskDoc.jsp?name=urn:lsid:broad.mit.edu:cancer.software.genepattern.module.analysis:00397:0.3)