https://github.com/genepattern/stream.epgadjustfinalgraph

An optional final step to optimize branching, prune the graph or extend leaf nodes following generation of the Elastic Principal Graph
https://github.com/genepattern/stream.epgadjustfinalgraph

genepattern-module rna-seq single-cell

Last synced: 4 months ago
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An optional final step to optimize branching, prune the graph or extend leaf nodes following generation of the Elastic Principal Graph

• Host: GitHub
• URL: https://github.com/genepattern/stream.epgadjustfinalgraph
• Owner: genepattern
• License: bsd-3-clause
• Created: 2019-08-29T21:24:37.000Z (almost 7 years ago)
• Default Branch: master
• Last Pushed: 2020-02-04T17:55:54.000Z (over 6 years ago)
• Last Synced: 2024-12-31T03:13:35.148Z (over 1 year ago)
• Topics: genepattern-module, rna-seq, single-cell
• Language: Python
• Size: 28.1 MB
• Stars: 0
• Watchers: 7
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
# STREAM.EPGAdjustFinalGraph

Adjust the final EPG trajectory structure by pruning, extending and otherwise modifying the branches to optimize for single-cell data. This is an optional step in the STREAM workflow.

[Full Documentation](https://beta.genepattern.org/gp/getTaskDoc.jsp?name=urn:lsid:broad.mit.edu:cancer.software.genepattern.module.analysis:00400:0.4)