https://github.com/genepattern/stream.plot2dvisualization
UMap or TSNE validation plots
https://github.com/genepattern/stream.plot2dvisualization
genepattern-module rna-seq single-cell
Last synced: 11 months ago
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UMap or TSNE validation plots
- Host: GitHub
- URL: https://github.com/genepattern/stream.plot2dvisualization
- Owner: genepattern
- License: bsd-3-clause
- Created: 2019-09-03T16:53:48.000Z (almost 7 years ago)
- Default Branch: master
- Last Pushed: 2020-02-06T22:36:05.000Z (over 6 years ago)
- Last Synced: 2024-12-31T03:13:35.134Z (over 1 year ago)
- Topics: genepattern-module, rna-seq, single-cell
- Language: Python
- Size: 28 MB
- Stars: 1
- Watchers: 7
- Forks: 0
- Open Issues: 0
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Metadata Files:
- Readme: README.md
- License: LICENSE
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README
# STREAM.Plot2DVisualization
STREAM.Plot2DVisualization is used to check if there is clear meaningful trajectory pattern via TSNE or UMAP 2-D plots.
If so, we can continue the STREAM analysis; If not, go back to previous steps (preprocessing, feature selection and dimension reduction)
to modify the parameters.
[Full documentation](https://beta.genepattern.org/gp/getTaskDoc.jsp?name=urn:lsid:broad.mit.edu:cancer.software.genepattern.module.analysis:00406:0.12)