https://github.com/genepattern/tcga.sampleselection

TCGA.SampleSelection wrapper module for GenePattern.
https://github.com/genepattern/tcga.sampleselection

genepattern-module msigdb preprocess tcga utilities

Last synced: about 2 months ago
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TCGA.SampleSelection wrapper module for GenePattern.

• Host: GitHub
• URL: https://github.com/genepattern/tcga.sampleselection
• Owner: genepattern
• License: other
• Created: 2021-04-22T16:44:29.000Z (over 3 years ago)
• Default Branch: develop
• Last Pushed: 2024-01-03T18:02:45.000Z (12 months ago)
• Last Synced: 2024-01-03T19:23:27.895Z (12 months ago)
• Topics: genepattern-module, msigdb, preprocess, tcga, utilities
• Language: R
• Homepage:
• Size: 10.5 MB
• Stars: 0
• Watchers: 1
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE.txt

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README

        
# TCGA.SampleSelection

Retrieve TCGA data from Broad Firehose and perform sample selection on the basis of expression levels for specific genes of interest for analysis using GSEA tools.