https://github.com/genomicssport/enafetch
rustlang implementation for accessing ena for any datasets.
https://github.com/genomicssport/enafetch
bioinformatics european-nucleotide-archive genome-analysis rust-crate rust-lang
Last synced: 4 months ago
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rustlang implementation for accessing ena for any datasets.
- Host: GitHub
- URL: https://github.com/genomicssport/enafetch
- Owner: applicativesystem
- License: mit
- Created: 2024-10-20T06:46:57.000Z (about 1 year ago)
- Default Branch: main
- Last Pushed: 2024-10-20T19:22:14.000Z (about 1 year ago)
- Last Synced: 2024-11-10T20:18:05.841Z (about 1 year ago)
- Topics: bioinformatics, european-nucleotide-archive, genome-analysis, rust-crate, rust-lang
- Language: Rust
- Homepage:
- Size: 8.18 MB
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
Awesome Lists containing this project
README
# ena-rust-crate
- a rustlang command line application to access ena and download files asynchronously.
- made for high performance computing where you can put the project numbers and links will be ready.
- just specify the project number and your files will be ready.
- the crate is available from crates.io at the following [ena-rust-crate](https://crates.io/crates/rust-ena)
```
cargo install --path .
or
cargo build
╭─gauavsablok@gauravsablok ~/Desktop/rust/ena-rust on main ✘
╰$ ./target/release/rust-ena PRJEB55343
PRJEB55343 100% [====================>] 688 --.-KB/s
[Files: 1 Bytes: 688 ]
wget ftp.sra.ebi.ac.uk/vol1/fastq/ERR100/071/ERR10084071/ERR10084071_1.fastq.gz
wget ftp.sra.ebi.ac.uk/vol1/fastq/ERR100/071/ERR10084071/ERR10084071_2.fastq.gz
wget ftp.sra.ebi.ac.uk/vol1/fastq/ERR100/064/ERR10077564/ERR10077564.fastq.gz
```
Gaurav Sablok