https://github.com/gersteinlab/rseqtools

A modular framework to analyze RNA-Seq data using compact and anonymized data summaries.
https://github.com/gersteinlab/rseqtools

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A modular framework to analyze RNA-Seq data using compact and anonymized data summaries.

• Host: GitHub
• URL: https://github.com/gersteinlab/rseqtools
• Owner: gersteinlab
• License: other
• Created: 2014-04-15T00:02:45.000Z (over 11 years ago)
• Default Branch: master
• Last Pushed: 2015-03-24T16:56:49.000Z (almost 11 years ago)
• Last Synced: 2025-01-20T12:07:46.627Z (12 months ago)
• Language: C
• Size: 3.52 MB
• Stars: 3
• Watchers: 10
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README
  • License: LICENSE

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README

          

Introduction

============

RSEQtools contains a general C library (bios) and set of modules to analyze 

RNA-Seq data sets (mrf).

For more information please refer to http://rseqtools.gersteinlab.org/ 

Installation

============

The installation steps have to be executed in the following order:

1) Install the GNU Scientific Library

2) Install BIOS

   - Set the following environment variables:

     BIOINFOCONFDIR=/pathTo/RSEQtools/bios/conf

     BIOINFOGSLDIR=/pathTo/gsl-X.XX

   - Compiling BIOS:

     cd pathTo/RSEQtools/bios

     make

     make prod

3) Install MRF components

     cd pathTo/RSEQtools/mrf

     make

Important Note

==============

THIS PACKAGE (BIOS and MRF) IS PROVIDED "AS IS" AND WITHOUT ANY EXPRESS OR IMPLIED

WARRANTIES, INCLUDING, WITHOUT LIMITATION, THE IMPLIED WARRANTIES

OF MERCHANTIBILITY AND FITNESS FOR A PARTICULAR PURPOSE.