https://github.com/getwilds/wilds-wdl-writer

An LLM-based tool for building custom WDL workflows using validated components from the WILDS WDL Library
https://github.com/getwilds/wilds-wdl-writer

Last synced: about 1 month ago
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An LLM-based tool for building custom WDL workflows using validated components from the WILDS WDL Library

• Host: GitHub
• URL: https://github.com/getwilds/wilds-wdl-writer
• Owner: getwilds
• License: mit
• Created: 2026-03-23T18:22:56.000Z (4 months ago)
• Default Branch: main
• Last Pushed: 2026-05-27T23:46:59.000Z (about 2 months ago)
• Last Synced: 2026-05-28T01:22:39.774Z (about 2 months ago)
• Language: Python
• Size: 4.85 MB
• Stars: 0
• Watchers: 0
• Forks: 0
• Open Issues: 4
• Metadata Files:
  • Readme: README.md
  • Contributing: CONTRIBUTING.md
  • License: LICENSE
  • Codeowners: .github/CODEOWNERS

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README

          
# wilds-wdl-writer

> ⚠️ **Under Construction** — This tool is actively in development and is incomplete, unstable, and subject to breaking changes. Not intended for use at this time.

An LLM-based tool for building custom WDL workflows using validated components from the WILDS WDL Library.

This repository is the **Minimum Viable Product (MVP)** of a larger planned project. The final product is intended to be a point-and-click web application running on the Fred Hutch cluster, making WDL workflow generation accessible to users without requiring any local setup or command-line experience.

To learn more, read the [Design Specifications](docs/mvp_design_spec.md)

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Requirements (so far):

- `pandas`

- `numpy`

- `chromadb`

- `ollama`

- `rapidfuzz`

- `llama-index-core`

- `llama-index-embeddings-huggingface`

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### Schema

![Schema](docs/wdl_writer_0205.png)