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https://github.com/giatraskon/giatraskon

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README

        

# 💫 About Me:
- 🔭 Pursuing a Master's in Data Science and Information Technologies with a specialization in Bioinformatics and Biomedical Data Science at the National and Kapodistrian University of Athens, Greece.
- 🧬 Conducting my thesis in metagenomics under the supervision of [Georgios Pavlopoulos](https://www.pavlopouloslab.info/home-1) and [Fotis Baltoumas](https://github.com/fbaltoumas) at the BSRC Alexander Fleming, Athens, Greece.
- 🔬 Designed and implemented computational pipelines and machine learning approaches for analyzing biological data, including single-cell RNA sequencing, protein structure prediction, genetic variant detection, time series forecasting, and image analysis, with applications spanning cancer research, genomics, and data-driven healthcare solutions.
- 🤝 Open to collaborating on innovative bioinformatics, data science, and machine learning projects.
- 🌐 All of my projects are available [here](https://github.com/GiatrasKon?tab=repositories).

## 🌐 Socials:
[![LinkedIn](https://img.shields.io/badge/LinkedIn-%230077B5.svg?logo=linkedin&logoColor=white)](https://www.linkedin.com/in/giatraskon/)
[![Email](https://img.shields.io/badge/Email-%23D14836.svg?logo=gmail&logoColor=white)](mailto:[email protected])

# 💻 Tech Stack:
- Programming Languages:

![Python](https://img.shields.io/badge/python-3670A0?style=for-the-badge&logo=python&logoColor=ffdd54)
![Shell Script](https://img.shields.io/badge/Shell_Script-%23121011.svg?style=for-the-badge&logo=gnu-bash&logoColor=white)
![R](https://img.shields.io/badge/r-%23276DC3.svg?style=for-the-badge&logo=r&logoColor=white)
![MATLAB](https://img.shields.io/badge/MATLAB-%230077B5.svg?style=for-the-badge&logo=mathworks&logoColor=white)
![Perl](https://img.shields.io/badge/Perl-%2339457E.svg?style=for-the-badge&logo=perl&logoColor=white)
- Development Tools:

![Git](https://img.shields.io/badge/git-%23F05033.svg?style=for-the-badge&logo=git&logoColor=white)
![Anaconda](https://img.shields.io/badge/Anaconda-%2344A833.svg?style=for-the-badge&logo=anaconda&logoColor=white)
![Notion](https://img.shields.io/badge/Notion-%23000000.svg?style=for-the-badge&logo=notion&logoColor=white)
![Microsoft Office](https://img.shields.io/badge/Microsoft_Office-D83B01?style=for-the-badge&logo=microsoft-office&logoColor=white)
![LaTeX](https://img.shields.io/badge/latex-%23008080.svg?style=for-the-badge&logo=latex&logoColor=white)
![Markdown](https://img.shields.io/badge/markdown-%23000000.svg?style=for-the-badge&logo=markdown&logoColor=white)
- Data Science & Machine Learning:

![NumPy](https://img.shields.io/badge/numpy-%23013243.svg?style=for-the-badge&logo=numpy&logoColor=white)
![Pandas](https://img.shields.io/badge/pandas-%23150458.svg?style=for-the-badge&logo=pandas&logoColor=white)
![scikit-learn](https://img.shields.io/badge/scikit--learn-%23F7931E.svg?style=for-the-badge&logo=scikit-learn&logoColor=white)
![scikit-image](https://img.shields.io/badge/scikit--image-%23F7931E.svg?style=for-the-badge&logo=scikit-learn&logoColor=white)
![Optuna](https://img.shields.io/badge/Optuna-%233380FF.svg?style=for-the-badge&logo=optuna&logoColor=white)
![UMAP-learn](https://img.shields.io/badge/UMAP--learn-%23F2552C.svg?style=for-the-badge&logo=umap&logoColor=white)
![SciPy](https://img.shields.io/badge/SciPy-%230C55A5.svg?style=for-the-badge&logo=scipy&logoColor=white)
![TensorFlow](https://img.shields.io/badge/TensorFlow-%23FF6F00.svg?style=for-the-badge&logo=TensorFlow&logoColor=white)
![Keras](https://img.shields.io/badge/Keras-%23D00000.svg?style=for-the-badge&logo=Keras&logoColor=white)
![PyTorch](https://img.shields.io/badge/PyTorch-%23EE4C2C.svg?style=for-the-badge&logo=PyTorch&logoColor=white)
- Data Visualization:

![Plotly](https://img.shields.io/badge/Plotly-%233F4F75.svg?style=for-the-badge&logo=plotly&logoColor=white)
![Matplotlib](https://img.shields.io/badge/Matplotlib-%23ffffff.svg?style=for-the-badge&logo=Matplotlib&logoColor=black)
![Seaborn](https://img.shields.io/badge/Seaborn-%230AABCC.svg?style=for-the-badge&logo=seaborn&logoColor=white)
![Pillow](https://img.shields.io/badge/Pillow-%23FFA500.svg?style=for-the-badge&logo=pillow&logoColor=white)
- Operating Systems & Platforms:

![Windows Terminal](https://img.shields.io/badge/Windows%20Terminal-%234D4D4D.svg?style=for-the-badge&logo=windows-terminal&logoColor=white)
![Linux](https://img.shields.io/badge/Linux-FCC624?style=for-the-badge&logo=linux&logoColor=black)
![MySQL](https://img.shields.io/badge/mysql-%2300f.svg?style=for-the-badge&logo=mysql&logoColor=white)

## 🧬 Bioinformatics Tools:
- Sequence Analysis & Variant Calling:

![GATK](https://img.shields.io/badge/GATK-%234d8eff.svg?style=for-the-badge&logo=gatk&logoColor=white)
![SAMtools](https://img.shields.io/badge/SAMtools-%231C8C8C.svg?style=for-the-badge&logo=samtools&logoColor=white)
![BCFtools](https://img.shields.io/badge/BCFtools-%2338A6B0.svg?style=for-the-badge&logo=bcftools&logoColor=white)
![BWA](https://img.shields.io/badge/BWA-%23007ACC.svg?style=for-the-badge&logo=bwa&logoColor=white)
![bedtools](https://img.shields.io/badge/bedtools-%233482B4.svg?style=for-the-badge&logo=bedtools&logoColor=white)
![snpEff](https://img.shields.io/badge/snpEff-%2300C853.svg?style=for-the-badge&logo=snpeff&logoColor=white)
- Protein Structure Prediction:

![AlphaFold](https://img.shields.io/badge/AlphaFold-%23005A9C.svg?style=for-the-badge&logo=alphafold&logoColor=white)
![Rosetta Abinitio](https://img.shields.io/badge/Rosetta_Abinitio-%23FF9900.svg?style=for-the-badge&logo=rosetta&logoColor=white)
- Molecular Dynamics Simulation:

![NAMD](https://img.shields.io/badge/NAMD-%23444f95.svg?style=for-the-badge&logo=namd&logoColor=white)
![VMD](https://img.shields.io/badge/VMD-%23FF6347.svg?style=for-the-badge&logo=vmd&logoColor=white)
![mdtraj](https://img.shields.io/badge/mdtraj-%231E90FF.svg?style=for-the-badge&logo=mdtraj&logoColor=white)
- Multiple Sequence Alignment:

![MAFFT](https://img.shields.io/badge/MAFFT-%23EE82EE.svg?style=for-the-badge&logo=mafft&logoColor=white)
![MUSCLE](https://img.shields.io/badge/MUSCLE-%236A5ACD.svg?style=for-the-badge&logo=muscle&logoColor=white)
- Sequence Homology & Search:

![BLAST](https://img.shields.io/badge/BLAST-%231E90FF.svg?style=for-the-badge&logo=blast&logoColor=white)
![LAST](https://img.shields.io/badge/LAST-%23FFD700.svg?style=for-the-badge&logo=last&logoColor=black)
![DIAMOND](https://img.shields.io/badge/DIAMOND-%232DC4FF.svg?style=for-the-badge&logo=diamond&logoColor=white)
![HMMER](https://img.shields.io/badge/HMMER-%2300AEEF.svg?style=for-the-badge&logo=hmmer&logoColor=white)
- Sequence Search & Clustering:

![MMseqs2](https://img.shields.io/badge/MMseqs2-%2300C813.svg?style=for-the-badge&logo=MMseqs2&logoColor=white)
- Protein Structure Comparison & Search:

![Foldseek](https://img.shields.io/badge/Foldseek-%23FF4500.svg?style=for-the-badge&logo=foldseek&logoColor=white)
- Structural Visualization & Analysis:

![PyMOL](https://img.shields.io/badge/PyMOL-%23FF0000.svg?style=for-the-badge&logo=pymol&logoColor=white)
![ChimeraX](https://img.shields.io/badge/ChimeraX-%23DAA520.svg?style=for-the-badge&logo=chimerax&logoColor=white)
![XMGrace](https://img.shields.io/badge/XMGrace-%23FF69B4.svg?style=for-the-badge&logo=xmgrace&logoColor=white)
![Maestro Suite](https://img.shields.io/badge/Maestro%20Suite-%23FFB6C1.svg?style=for-the-badge&logo=maestro&logoColor=white)
- Single-Cell RNA Analysis:

![anndata](https://img.shields.io/badge/anndata-%2300CED1.svg?style=for-the-badge&logo=anndata&logoColor=white)
![scanpy](https://img.shields.io/badge/scanpy-%23008080.svg?style=for-the-badge&logo=scanpy&logoColor=white)
- Functional Enrichment & Profiling:

![gProfiler](https://img.shields.io/badge/gProfiler-%2372A0C1.svg?style=for-the-badge&logo=gprofiler&logoColor=white)
- Programming Libraries:

![Biopython](https://img.shields.io/badge/Biopython-%23317B63.svg?style=for-the-badge&logo=biopython&logoColor=white)

# 📊 GitHub Stats:

![](https://github-readme-stats.vercel.app/api?username=GiatrasKon&theme=dark&hide_border=false&include_all_commits=false&count_private=false)

![](https://github-readme-streak-stats.herokuapp.com/?user=GiatrasKon&theme=dark&hide_border=false)


![](https://github-readme-stats.vercel.app/api/top-langs/?username=GiatrasKon&theme=dark&hide_border=false&include_all_commits=false&count_private=false&layout=compact)

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