Ecosyste.ms: Awesome

An open API service indexing awesome lists of open source software.

Awesome Lists | Featured Topics | Projects

https://github.com/giatraskon/sandbox.bio-solutions

Bash scripts replicating the commands from sandbox.bio's interactive bioinformatics tutorials, organized by categories such as Data Exploration, File Formats, Quality Control, and Data Analysis.
https://github.com/giatraskon/sandbox.bio-solutions

bam-files bash bed-files bioinformatics bioinformatics-workflows command-line-tools computational-biology data-analysis data-exploration data-wrangling fasta-files fastq-files file-formats genomic-data quality-control sandbox-bio sandbox-bio-tutorials sequence-alignment unix-shell variant-calling

Last synced: about 2 months ago
JSON representation

Bash scripts replicating the commands from sandbox.bio's interactive bioinformatics tutorials, organized by categories such as Data Exploration, File Formats, Quality Control, and Data Analysis.

Awesome Lists containing this project

README 

        

# Solutions to sandbox.bio Tutorials (WORK IN PROGRESS)



This repository provides solutions to the interactive bioinformatics tutorials available on [sandbox.bio](https://sandbox.bio/tutorials). These tutorials cover various aspects of bioinformatics, offering hands-on experience with command-line tools directly in the browser. Each tutorial is designed to help users explore and analyze biological data effectively.



---



## About sandbox.bio



[sandbox.bio](https://sandbox.bio) is a platform offering interactive bioinformatics tutorials that run entirely in the browser. By compiling bioinformatics command-line tools into WebAssembly, sandbox.bio allows users to experiment and learn without the need for local installations. The tutorials cover a wide range of topics, from terminal basics to advanced data analysis techniques, providing a comprehensive learning experience for both beginners and experienced practitioners.



---



## Repository Structure



The repository is organized into directories corresponding to the main categories of sandbox.bio tutorials:



- **Data_exploration**: Tutorials focused on exploring and manipulating data using command-line tools.

- **File_formats**: Tutorials dealing with different biological file formats and their processing.

- **Quality_control**: Tutorials aimed at assessing and ensuring the quality of biological data.

- **Data_analysis**: Tutorials covering various data analysis techniques in bioinformatics.



Within each directory, you'll find Bash scripts named after their respective tutorials. Each script contains all the commands used in the corresponding tutorial, allowing you to replicate the tutorial steps locally.



---



## How to Use



1. Begin by cloning this repository to your local machine using the following command:

```bash

git clone https://github.com/GiatrasKon/sandbox.bio-Solutions.git

```

2. Navigate to the directory that corresponds to the tutorial category you're interested in. For example:

```bash

cd sandbox-bio-solutions/Data_exploration

```

3. Review the specific tutorial script of interest to understand the commands. This will enhance your learning experience and deepen your comprehension of the underlying concepts.



**Note**: Ensure that all necessary tools and dependencies are installed on your system. The scripts are designed to mirror the commands used in the sandbox.bio tutorials, which operate within a browser-based environment. Some commands or tools might require specific installations or configurations on your local machine.



---