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https://github.com/glemaitre/embc2015-exp
https://github.com/glemaitre/embc2015-exp
Last synced: 8 days ago
JSON representation
- Host: GitHub
- URL: https://github.com/glemaitre/embc2015-exp
- Owner: glemaitre
- License: gpl-2.0
- Created: 2015-03-09T13:42:20.000Z (almost 10 years ago)
- Default Branch: master
- Last Pushed: 2016-01-20T23:19:11.000Z (almost 9 years ago)
- Last Synced: 2024-10-28T02:06:13.689Z (about 2 months ago)
- Language: Python
- Size: 69.2 MB
- Stars: 0
- Watchers: 3
- Forks: 1
- Open Issues: 3
-
Metadata Files:
- Readme: README.md
- License: LICENSE
Awesome Lists containing this project
README
EMBC 2015
=========
This is a study of MRI data alignment in Prostate imaging.
Targeting EMBC 2015 conference
Thesis
------
The MRI data between patients is not aligned. Therefore normalizing, speriphing, etc. the data has makes no sense when the features are not aligned.
Goal
----
* Illustrate the problem
* Propose an alignment method
* try to calculate xxxxxx
File Structure
--------------
project
|- doc/ # documentation for the study
| +- paper/ # manuscript(s), whether generated or not
|
|- data # raw and primary data, are not changed once created
| |- raw/ # raw data, will not be altered
| +- clean/ # cleaned data, will not be altered once created
|
|- src/ # any programmatic code
| |- experiment-t2w.ipynb # main notebook for the T2 experiment
| |- README # software structure description
|
|- results # all output from workflows and analyses
| |- figures/ # graphs, likely designated for manuscript figures
| +- pictures/ # diagrams, images, and other non-graph graphics
|
|- scratch/ # temporary files that can be safely deleted or lost
|- README # the top level description of content
Execution
---------
```
cd ./src/
ipython notebook
```
Todo
----
- [ ] Add project information goals, etc... @guillaume
- [ ] change src/README.md
- [ ] Change data/README description @guillaume
- [ ]