https://github.com/gmauro/pubs2015
https://github.com/gmauro/pubs2015
Last synced: 2 months ago
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- Host: GitHub
- URL: https://github.com/gmauro/pubs2015
- Owner: gmauro
- Created: 2015-02-24T12:07:33.000Z (over 10 years ago)
- Default Branch: master
- Last Pushed: 2015-02-19T14:55:18.000Z (over 10 years ago)
- Last Synced: 2025-02-03T11:14:29.634Z (4 months ago)
- Size: 10.9 MB
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
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README
PUBS 2015 Bioinformatics Workshop
=================================
We discuss the role of bioinformatics in biomedical research and provide a workshop to highlight the benefits of creating reproducible bioinformatics workflows using free, and open-source software. We will give a hands-on demonstration using Galaxy, a web-based platform for biomedical research, as an example of open-source bioinformatics software that enables scientists to create reproducible and shareable workflows in a user-friendly environment.
[Section 1](Section1/Section1.md)
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The first section of the workshop demonstrates using tools in Galaxy by walking through the steps required to do basic sequence annotation on a public instance of Galaxy. We assume the reader has no previous experience with Galaxy.
[Section 2](Section2/Section2.md)
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This section of the workshop tasks the reader with creating a workflow for the sequence annotation procedure performed in Section 1. We assume the reader has completed Section 1 of this workshop.
[Exercises](Section2/Exercises.md)
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The exercises include multiple datasets and exercises for running and troubleshooting the workflow created in Section 2. We assume the reader has completed Section 2 of this workshop.