https://github.com/gmod/jbrowse-components

Source code for JBrowse 2, a modern React-based genome browser
https://github.com/gmod/jbrowse-components

bioinformatics genomics jbrowse visualization

Last synced: 4 months ago
JSON representation

Source code for JBrowse 2, a modern React-based genome browser

• Host: GitHub
• URL: https://github.com/gmod/jbrowse-components
• Owner: GMOD
• License: apache-2.0
• Created: 2018-10-05T17:14:00.000Z (almost 8 years ago)
• Default Branch: main
• Last Pushed: 2026-03-29T03:47:13.000Z (4 months ago)
• Last Synced: 2026-03-29T06:28:19.469Z (4 months ago)
• Topics: bioinformatics, genomics, jbrowse, visualization
• Language: TypeScript
• Homepage: https://jbrowse.org/jb2
• Size: 282 MB
• Stars: 278
• Watchers: 17
• Forks: 79
• Open Issues: 190
• Metadata Files:
  • Readme: README.md
  • Changelog: CHANGELOG.md
  • Contributing: CONTRIBUTING.md
  • License: LICENSE
  • Code of conduct: CODE_OF_CONDUCT.md

Awesome Lists containing this project

README

          
[![Build Status](https://img.shields.io/github/actions/workflow/status/GMOD/jbrowse-components/push.yml?branch=main&logo=github&style=for-the-badge)](https://github.com/GMOD/jbrowse-components/actions)

[![Contributor Covenant](https://img.shields.io/badge/Contributor%20Covenant-v1.4%20adopted-ff69b4.svg?style=for-the-badge&logo=data:image/svg+xml;base64,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)](CODE_OF_CONDUCT.md)

JBrowse 2 is a modern genome browser with features such as...

- synteny visualization between different genomes

- advanced BAM, CRAM, and structural variant visualization features

- and much more

JBrowse 2 can be installed as a desktop app on Mac, Windows, or Linux, or it can

be deployed on websites.

JBrowse 2 is also "static website compatible" meaning it only uses client-side

JS, CSS, and HTML.

The core technology stack includes React, Typescript, and

@jbrowse/mobx-state-tree

## Quick-start guide

- For desktop users, downloads page here https://jbrowse.org/jb2/download/

- For web developers, please see https://jbrowse.org/jb2/docs/quickstart_web/

## Other links

- Homepage https://jbrowse.org/jb2

- Gallery https://jbrowse.org/jb2/gallery

- Docs http://jbrowse.org/jb2/docs/

- Contact and office hours - https://jbrowse.org/jb2/contact

## Publications

- _JBrowse 2: a modular genome browser with views of synteny and structural

  variation_ (2023)

  https://genomebiology.biomedcentral.com/articles/10.1186/s13059-023-02914-z

- _Setting up the JBrowse 2 genome browser_ (2024)

  https://currentprotocols.onlinelibrary.wiley.com/doi/full/10.1002/cpz1.1120

## Contributing to the codebase

See [CONTRIBUTING.md](/CONTRIBUTING.md) for more info