https://github.com/google-research/connectomics

https://github.com/google-research/connectomics

connectomics

Last synced: over 1 year ago
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• Host: GitHub
• URL: https://github.com/google-research/connectomics
• Owner: google-research
• License: apache-2.0
• Created: 2022-02-11T23:51:24.000Z (over 4 years ago)
• Default Branch: main
• Last Pushed: 2025-03-03T19:42:00.000Z (over 1 year ago)
• Last Synced: 2025-03-30T16:11:52.755Z (over 1 year ago)
• Topics: connectomics
• Language: Python
• Homepage:
• Size: 405 KB
• Stars: 41
• Watchers: 7
• Forks: 12
• Open Issues: 6
• Metadata Files:
  • Readme: README.md
  • Contributing: CONTRIBUTING.md
  • License: LICENSE

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README

          
# Connectomics

[![License](https://img.shields.io/badge/License-Apache%202.0-blue.svg)](https://opensource.org/licenses/Apache-2.0)

### _Note: Under heavy development_

_This repository is currently under significant development, and should not be considered stable. Semantic versioning is not guaranteed for now; APIs may - and likely will - change often and without notice._

## About this repository

Common code for analyzing volumetric datasets for connectomic reconstruction, including geometric primitives like `BoundingBox` and `BoxGenerator`, and dealing with segmentation ID ranges, including relabeling, making ranges contiguous, and testing whether two volumes contain equivalent sequences. 

Coming soon: pipeline primitives to process subvolumes.

## Projects using Connectomics

1. [SOFIMA](https://www.github.com/google-research/sofima) - SOFIMA (Scalable Optical Flow-based Image Montaging and Alignment) is a tool for stitching, aligning and warping large 2d, 3d and 4d microscopy datasets.

_This is not an officially supported Google product._