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https://github.com/grabear/raspbian-shinyserverandpython36
Installation scripts for Python 3.6.2 and Shiny-Server
https://github.com/grabear/raspbian-shinyserverandpython36
bash data-science python3 python3-6-2 python36 r raspberry-pi-3 raspbian raspbian-stretch rshiny shell shiny shiny-apps shiny-server
Last synced: 19 days ago
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Installation scripts for Python 3.6.2 and Shiny-Server
- Host: GitHub
- URL: https://github.com/grabear/raspbian-shinyserverandpython36
- Owner: grabear
- Created: 2017-09-19T00:11:36.000Z (about 7 years ago)
- Default Branch: master
- Last Pushed: 2018-09-11T00:42:26.000Z (about 6 years ago)
- Last Synced: 2023-10-20T20:04:50.687Z (about 1 year ago)
- Topics: bash, data-science, python3, python3-6-2, python36, r, raspberry-pi-3, raspbian, raspbian-stretch, rshiny, shell, shiny, shiny-apps, shiny-server
- Language: Shell
- Homepage:
- Size: 33.2 KB
- Stars: 7
- Watchers: 1
- Forks: 5
- Open Issues: 1
-
Metadata Files:
- Readme: README.md
Awesome Lists containing this project
README
# Install Shiny Server and Python 3.6.0 on Raspbian
## Overview
The purpose for this project is to install Shiny Server and Python on the Raspian OS for Raspberry Pi.
## Pre-Requisites:
The current setup has been tested on [Raspbian Stretch](https://www.raspberrypi.org/downloads/raspbian/) with a Raspberry Pi 3 Model B. The installation will take some time; especially over wifi. It is recommended to run this over ethernet.
It's recommended to run the installation one step at a time OR do the full installation when you have several hours to allow it to complete.
## Full Installation
To run the full installation use master-install.sh. Again, recommended to do this overnight or when you can dedicate several hours for completion.
The following software will be installed with the full installation:
* **APT packages**
* **R dependencies**
* `libxml2-dev`, `libssl-dev`, `libcurl4-openssl-dev`, `libssh2-1-dev`
* **Python dependencies**
* `cmake`
* `build-essential`, `tk-dev`, `libncurses5-dev`, `libncursesw5-dev`, `libreadline6-dev`, `libdb5.3-dev`, `libgdbm-dev`, `libsqlite3-dev`, `libssl-dev`, `libbz2-dev`, `libexpat1-dev`, `liblzma-dev`, `zlib1g-dev`
* **R and R packages**
* **CRAN**
* `devtools`, `shiny`, `shinythemes`, `shinyBS`, `shinyjs`, `europepmc`, `DT`, `data.table`, `markdown`, `rclipboard`, `shinycssloaders`, `shinydashboard`, `shinyFiles`, `shinyFeedback`,`shinyHeatmaply`, `shinyjqui`, `shinyWidgets`, `bsplus`, `colourpicker`
* **GitHub**
* `cstubben/euPMC`, `robear22890/shinyLP`, `mkuhn/dict`, `ayayron/shinydnd`, `Appsilon/shiny.semantic`, `rstudio/miniUI`, `zachcp/msaR`
* **Bioconductor**
* `ggtree`, `cummeRbund`
* **Shiny-Server**
* **Python 3.6.2**
* **PyPI**
* pandas >= 0.19.2
* slacker == 0.9.42
* biopython == 1.70
* cookiecutter == 1.5.1
* sciluigi == 0.9.5b6
#### To run full installation:
```bash
pi@raspberrypi $ . master-install.sh
```
## Python 3.6.2 Installation
_Python 3.6.2 installation on Raspbian was inspired by
[this Gist](https://gist.github.com/dschep/24aa61672a2092246eaca2824400d37f)._
#### To install python 3.6.2:
```bash
pi@raspberrypi $ . master-python3.6.2-install.sh
```
This installation script also installs the PyPI packages in requirements.txt file.
If you do not desire these packages, then comment out the following lines in the py3.6.2-install.sh file:
```python
sudo apt-get -y autoremove
sudo apt-get -y clean
# Install python packages
# cd $DIR
# pip install -r requirements.txt
# Update system
sudo apt-get -y update
sudo apt-get -y upgrade
```
Alternatively, you can rewrite the requirements.txt file to fit your own needs.
**Note:** _At the time of writing this guide Python 3.6.2 was the latest release. If a newer release is
available via the python [website](https://www.python.org/downloads/source/), then please make a pull
request that changes the various file names and code. You may also feel free to manually change them yourself._
## R Installation
#### To install R :
```bash
pi@raspberrypi $ . master-R-install.sh
```
## Shiny-Server Installation
_Shiny-Server installation on Raspbian was inspired by R-Studio's guide [here](https://github.com/rstudio/shiny-server/wiki/Building-Shiny-Server-from-Source#installation)._
#### To install Shiny-Server:
```bash
pi@raspberrypi $ . master-shiny-server-install.sh
```
After shiny server is installed it will automatically run on reboot. In order to remove this functionality comment out the following lines in the shiny-server.service file:
```bash
[Service]
Type=simple
ExecStart=/usr/bin/shiny-server
#Restart=always
ExecReload=/bin/kill -HUP $MAINPID
ExecStopPost=/bin/sleep 5
RestartSec=1
[Install]
WantedBy=multi-user.target
```
___
## Future Release Features
* R-Studio-Server Installation