https://github.com/hadim/hadim_scripts

A set of plugins/macros/script for Fiji.
https://github.com/hadim/hadim_scripts

Last synced: 9 months ago
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A set of plugins/macros/script for Fiji.

• Host: GitHub
• URL: https://github.com/hadim/hadim_scripts
• Owner: hadim
• License: bsd-3-clause
• Created: 2015-01-22T21:35:15.000Z (over 11 years ago)
• Default Branch: master
• Last Pushed: 2020-10-07T15:51:32.000Z (over 5 years ago)
• Last Synced: 2025-09-02T07:40:10.020Z (9 months ago)
• Language: Python
• Size: 469 KB
• Stars: 1
• Watchers: 2
• Forks: 2
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
# Fiji Scripts

[![Build Status](https://travis-ci.com/hadim/Hadim_Scripts.svg?branch=master)](https://travis-ci.com/hadim/Hadim_Scripts)

A set of scripts and small plugins for Fiji.

Use it, hack it, share it.

## Installation

You need to add the `Hadim` update site:

- Go to `Help ▶ Update Fiji`.

- In the new window, click on `Manage update sites`.

- Scroll to find `Hadim` in the column `Name`. Click on it.

- Click `Close` and then `Apply changes`.

## The scripts

To open and run the scripts do the following:

- Click on `File ▶ New ▶ Script...`

- The Script Editor window will open.

- Scripts are available in `Templates ▶ Hadim Scripts`.

## The plugins

The package also contains very specific small plugins (often wrappers around [Image Ops](https://github.com/imagej/imagej-ops)). They can be found under `Plugins ▶ Hadim`.

- `Pseudo Flat-Field Correction` : A preprocessing step that try to remove the backgound from your image.

- `DOG Filter` : A preprocessing step that filter small and large features from your image.

## License

Under BSD license. See [LICENSE](LICENSE).

## Authors

- Hadrien Mary