https://github.com/haesleinhuepf/napari-pyfast-image-processing

Use pyFAST's CPU/GPU-accelerated image processing from within napari.
https://github.com/haesleinhuepf/napari-pyfast-image-processing

napari-plugin

Last synced: 2 months ago
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Use pyFAST's CPU/GPU-accelerated image processing from within napari.

• Host: GitHub
• URL: https://github.com/haesleinhuepf/napari-pyfast-image-processing
• Owner: haesleinhuepf
• License: bsd-3-clause
• Created: 2021-12-28T19:04:32.000Z (almost 3 years ago)
• Default Branch: main
• Last Pushed: 2021-12-28T20:38:36.000Z (almost 3 years ago)
• Last Synced: 2024-07-16T14:54:41.520Z (3 months ago)
• Topics: napari-plugin
• Language: Python
• Homepage:
• Size: 8.79 MB
• Stars: 1
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# napari-pyfast-image-processing (npyFAST)

[![License](https://img.shields.io/pypi/l/napari-pyfast-image-processing.svg?color=green)](https://github.com/haesleinhuepf/napari-pyfast-image-processing/raw/main/LICENSE)

[![PyPI](https://img.shields.io/pypi/v/napari-pyfast-image-processing.svg?color=green)](https://pypi.org/project/napari-pyfast-image-processing)

[![Python Version](https://img.shields.io/pypi/pyversions/napari-pyfast-image-processing.svg?color=green)](https://python.org)

[![tests](https://github.com/haesleinhuepf/napari-pyfast-image-processing/workflows/tests/badge.svg)](https://github.com/haesleinhuepf/napari-pyfast-image-processing/actions)

[![codecov](https://codecov.io/gh/haesleinhuepf/napari-pyfast-image-processing/branch/main/graph/badge.svg)](https://codecov.io/gh/haesleinhuepf/napari-pyfast-image-processing)

[![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/napari-pyfast-image-processing)](https://napari-hub.org/plugins/napari-pyfast-image-processing)

Use [pyFAST's](https://fast.eriksmistad.no) CPU/GPU-accelerated image processing from within napari. 

Available functions are yet limited to some simple operations such as `gaussian_blur, image_gradient, laplacian_of_gaussian_2D, image_sharpening_2D, dilation, erosion`.

----------------------------------

This [napari] plugin was generated with [Cookiecutter] using [@napari]'s [cookiecutter-napari-plugin] template.

## Installation

First make sure that the requirements of FAST are [installed as described here](https://fast.eriksmistad.no/requirements.html).

Afterwards, you can install `napari-pyfast-image-processing` via [pip]:

```

pip install git+https://github.com/haesleinhuepf/napari-pyfast-image-processing.git

```

## Contributing

Contributions are very welcome. Tests can be run with [tox], please ensure

the coverage at least stays the same before you submit a pull request.

## License

Distributed under the terms of the [BSD-3] license,

"napari-pyfast-image-processing" is free and open source software

## Issues

If you encounter any problems, please [file an issue] along with a detailed description.

[napari]: https://github.com/napari/napari

[Cookiecutter]: https://github.com/audreyr/cookiecutter

[@napari]: https://github.com/napari

[MIT]: http://opensource.org/licenses/MIT

[BSD-3]: http://opensource.org/licenses/BSD-3-Clause

[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt

[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt

[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0

[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt

[cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin

[file an issue]: https://github.com/haesleinhuepf/napari-pyfast-image-processing/issues

[napari]: https://github.com/napari/napari

[tox]: https://tox.readthedocs.io/en/latest/

[pip]: https://pypi.org/project/pip/

[PyPI]: https://pypi.org/