https://github.com/hammerlab/ngsdiagnostics
Diagnostic Scripts for an NGS Pipeline
https://github.com/hammerlab/ngsdiagnostics
Last synced: over 1 year ago
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Diagnostic Scripts for an NGS Pipeline
- Host: GitHub
- URL: https://github.com/hammerlab/ngsdiagnostics
- Owner: hammerlab
- Created: 2014-02-27T20:57:32.000Z (over 12 years ago)
- Default Branch: master
- Last Pushed: 2014-03-30T05:11:12.000Z (about 12 years ago)
- Last Synced: 2025-01-08T12:56:56.724Z (over 1 year ago)
- Language: Python
- Size: 813 KB
- Stars: 3
- Watchers: 13
- Forks: 1
- Open Issues: 9
-
Metadata Files:
- Readme: README.md
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README
ngsdiagnostics
==============
Diagnostic Scripts for an NGS Pipeline
To run inside of a venv (preferred):
```
$ curl -O 'https://gist.github.com/vsajip/4673395/raw/3420d9150ce1e9797dc8522fce7386d8643b02a1/pyvenvex.py'
$ python3 pyvenvex.py venv-ngsdiagnostics
$ cd venv-ngsdiagnostics
$ source bin/activate
$ git clone https://github.com/hammerlab/ngsdiagnostics.git
$ cd ngsdiagnostics
$ python setup.py install
$ run_perfdash.py
```
You should now be able to navigate to http://127.0.0.1:5000 and view the dashboard running with some [sample data](https://git.mssm.edu/hammerlab/ngsdiagnostics/blob/master/data/perf-runs.db).