https://github.com/harryscholes/fasta-rs

FASTA file parser implemented in Rust using Chumsky
https://github.com/harryscholes/fasta-rs

Last synced: 3 months ago
JSON representation

FASTA file parser implemented in Rust using Chumsky

• Host: GitHub
• URL: https://github.com/harryscholes/fasta-rs
• Owner: harryscholes
• Created: 2022-12-23T07:43:39.000Z (over 2 years ago)
• Default Branch: main
• Last Pushed: 2022-12-29T11:01:24.000Z (over 2 years ago)
• Last Synced: 2025-02-05T10:49:02.580Z (4 months ago)
• Language: Rust
• Homepage:
• Size: 5.86 KB
• Stars: 0
• Watchers: 3
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

Awesome Lists containing this project

README

        
# fasta-rs

FASTA file parser implemented in Rust using [Chumsky](https://github.com/zesterer/chumsky).

## Usage

```rs

use fasta_rs::{parser, Parser, Record};

fn main() {

    let fasta_file = String::from(">...");

    let records: Vec = parser().parse(fasta_file).unwrap();

}

```

```

❯ cargo run -q -- example.fa

[

    Record {

        identifier: "gi|2765658|emb|Z78533.1|CIZ78533",

        description: "C.irapeanum 5.8S rRNA gene and ITS1 and ITS2 DNA",

        sequence: "CGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGATGAGACCGTGGAATAAACGATCGAGTGAATCCGGAGGACCGGTGTACTCAGCTCACCGGGGGCATTGCTCCCGTGGTGACCCTGATTTGTTGTTGGGCCGCCTCGGGAGCGTCCATGGCGGGTT",

    },

    Record {

        identifier: "gi|2765658|emb|Z78533.1|CIZ78533",

        description: "C.irapeanum 5.8S rRNA gene and ITS1 and ITS2 DNA",

        sequence: "CGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGATGAGACCGTGGAATAAACGATCGAGTGAATCCGGAGGACCGGTGTACTCAGCTCACCGGGGGCATTGCTCCCGTGGTGACCCTGATTTGTTGTTGGGCCGCCTCGGGAGCGTCCATGGCGGGTT",

    },

]

```