https://github.com/hbhargava7/flowtx

Toolkit for flow cytometry data analysis
https://github.com/hbhargava7/flowtx

Last synced: 1 day ago
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Toolkit for flow cytometry data analysis

• Host: GitHub
• URL: https://github.com/hbhargava7/flowtx
• Owner: hbhargava7
• License: gpl-3.0
• Created: 2023-09-02T18:11:15.000Z (over 1 year ago)
• Default Branch: main
• Last Pushed: 2024-12-15T23:56:01.000Z (7 days ago)
• Last Synced: 2024-12-16T00:17:22.583Z (7 days ago)
• Language: Python
• Size: 50.7 MB
• Stars: 2
• Watchers: 1
• Forks: 0
• Open Issues: 3
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# flowtx

Toolkit for flow cytometry data analysis

Internal reference: https://www.notion.so/hershbhargava/PMOC-Flowtx-154f70a8edc78081a563e27f4078f0d3?pvs=4

### Installation and Usage

After the cloning the repository you can build the FlowTx conda environment using the script

```bash

./config_conda_env.sh

```

This will create a conda environment named `flowtx` with all the necessary packages to run the scripts in this repository.

### Notes

Note on dependencies: Flowtx relies on `whitews/flowkit` to interface with FlowJo files. When FlowTx was initially built