https://github.com/henrikbengtsson/aroma.seq

🔬 R package: aroma.seq: High-Throughput Sequence Analysis using the Aroma Framework
https://github.com/henrikbengtsson/aroma.seq

bioinformatics distributed-computing framework genomics hpc ht-seq large-scale package parallel r

Last synced: 17 days ago
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🔬 R package: aroma.seq: High-Throughput Sequence Analysis using the Aroma Framework

• Host: GitHub
• URL: https://github.com/henrikbengtsson/aroma.seq
• Owner: HenrikBengtsson
• Created: 2014-06-15T04:46:25.000Z (over 10 years ago)
• Default Branch: develop
• Last Pushed: 2021-02-10T02:58:11.000Z (almost 4 years ago)
• Last Synced: 2024-05-09T10:37:59.548Z (8 months ago)
• Topics: bioinformatics, distributed-computing, framework, genomics, hpc, ht-seq, large-scale, package, parallel, r
• Language: R
• Homepage: https://github.com/HenrikBengtsson/aroma.seq
• Size: 2.79 MB
• Stars: 0
• Watchers: 4
• Forks: 1
• Open Issues: 26
• Metadata Files:
  • Readme: README.md

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README

        
# aroma.seq: High-Throughput Sequence Analysis using the Aroma Framework

## Installation

R package aroma.seq is only available via [GitHub](https://github.com/HenrikBengtsson/aroma.seq) and can be installed in R as:

```r

remotes::install_github("HenrikBengtsson/aroma.seq", ref="master")

```

### Pre-release version

To install the pre-release version that is available in Git branch `develop` on GitHub, use:

```r

remotes::install_github("HenrikBengtsson/aroma.seq", ref="develop")

```

This will install the package from source.  

## Contributions

This Git repository uses the [Git Flow](http://nvie.com/posts/a-successful-git-branching-model/) branching model (the [`git flow`](https://github.com/petervanderdoes/gitflow-avh) extension is useful for this).  The [`develop`](https://github.com/HenrikBengtsson/aroma.seq/tree/develop) branch contains the latest contributions and other code that will appear in the next release, and the [`master`](https://github.com/HenrikBengtsson/aroma.seq) branch contains the code of the latest release.

Contributing to this package is easy.  Just send a [pull request](https://help.github.com/articles/using-pull-requests/).  When you send your PR, make sure `develop` is the destination branch on the [aroma.seq repository](https://github.com/HenrikBengtsson/aroma.seq).  Your PR should pass `R CMD check --as-cran`, which will also be checked by Travis CI and AppVeyor CI when the PR is submitted.

## Software status

| Resource      | GitHub        | GitHub Actions      | Travis CI       | AppVeyor CI      |

| ------------- | ------------------- | ------------------- | --------------- | ---------------- |

| _Platforms:_  | _Multiple_          | _Multiple_          | _Linux & macOS_ | _Windows_        |

| R CMD check   |  |        |    |  |

| Test coverage |                     |                     |      |                  |