https://github.com/hereariim/esrf-napari
https://github.com/hereariim/esrf-napari
Last synced: 12 months ago
JSON representation
- Host: GitHub
- URL: https://github.com/hereariim/esrf-napari
- Owner: hereariim
- Created: 2024-01-29T07:17:40.000Z (over 2 years ago)
- Default Branch: main
- Last Pushed: 2024-02-05T11:38:18.000Z (over 2 years ago)
- Last Synced: 2024-02-06T08:38:22.437Z (over 2 years ago)
- Language: Jupyter Notebook
- Size: 20.7 MB
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
Awesome Lists containing this project
README
# ESRF NAPARI : Napari as a tool for deep learning project management
This document is part of the Hands on session of the ESRF User Meeting T1. The aim of this document is to show the value of napari in Deep learning project managemeent
It is not intended to be a training session. That would require a lot of time to fully explore napari. The Hands on session for napari is a three-part discovery activity:
- Introducing the napari visualisation tools
- Getting started the design of a plugin
- Getting started the development of this plugin by adding a widget
## Prerequisites tools for this session Hands On
- Operating system : Windows
- [Anaconda distribution](https://www.anaconda.com/download)
- [Napari](https://napari.org/stable/tutorials/fundamentals/installation.html) as **bundle app** and **python library**
- [VS Code](https://code.visualstudio.com/)
- [Git](https://git-scm.com/download/win) (Standalone Installer)
- In conda environment napari :
* Tensorflow (v2.11.0)
* opencv-python
* numpy
* skimage
## Useful links
- [Finding and installing a napari plugin](https://napari.org/stable/plugins/find_and_install_plugin.html) : Install napari
- [Your First Plugin](https://napari.org/stable/plugins/first_plugin.html) : Design your plugin
- [Napari hub](https://www.napari-hub.org/) : Napari hub is a service of the Chan Zuckerberg Initiative in collaboration with Napari. Here, you can discover, install, and share napari plugins
- [Image.sc](https://forum.image.sc/tag/napari) : Help or support requests send to napari community partner
- [Github issues](https://github.com/napari/napari/issues) : Bug reports
- [FAQ](https://www.napari-hub.org/faq) : Reccurent questions about napari, napari-hub and the way for building and sharing plugins
Video tutorial (in french) :
- [Installer NAPARI et faire son premier plugin](https://www.youtube.com/watch?v=lMEVJxIlkXw&ab_channel=ImHorPhenBioimagingresearchgroup)
- [NAPARI Plugin for deep segmentation and manual correction](https://www.youtube.com/watch?v=Wzgl1aDT504&t=872s&ab_channel=ImHorPhenBioimagingresearchgroup)
## Authors
Herearii Metuarea, Engineer at Université d'Angers
## Other contributors
Imhorphen team at Université d'Angers:
* David Rousseau, Full Professor, Université d'Angers
## Contribution
This workshop is a part of ESRF User Meeting T1 offered by Imhorphen team. It was written in the context of PHENET project.