https://github.com/hereariim/ippn_napari
This is a training tutorial to learn how to integrate deep learning model into napari plugin from scratch
https://github.com/hereariim/ippn_napari
Last synced: 4 months ago
JSON representation
This is a training tutorial to learn how to integrate deep learning model into napari plugin from scratch
- Host: GitHub
- URL: https://github.com/hereariim/ippn_napari
- Owner: hereariim
- Created: 2023-06-19T09:55:58.000Z (almost 3 years ago)
- Default Branch: main
- Last Pushed: 2025-02-23T15:45:21.000Z (over 1 year ago)
- Last Synced: 2025-07-03T09:11:31.325Z (12 months ago)
- Language: Jupyter Notebook
- Size: 10.7 MB
- Stars: 3
- Watchers: 1
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
Awesome Lists containing this project
README
# IPPN : Napari as a tool for phenotyping
This document is part of the Hands on session of the IPPN 2023. The aim of this document is to show the value of napari in plant phenotyping.
It is not intended to be a training session. That would require a lot of time to fully explore napari. The Hands on session for napari is a three-part discovery activity:
- Introducing the napari visualisation tools
- Getting started a napari plugin
- Getting started the design and development of a plugin
## Prerequisites tools for this session Hands On
- Anaconda distribution
- Napari as **bundle app** and **python library**
- VS Code
- Git (Standalone Installer)
## Useful links
- [Finding and installing a napari plugin](https://napari.org/stable/plugins/find_and_install_plugin.html) : Install napari
- [Your First Plugin](https://napari.org/stable/plugins/first_plugin.html) : Design your plugin
- [Napari hub](https://www.napari-hub.org/) : Napari hub is a service of the Chan Zuckerberg Initiative in collaboration with Napari. Here, you can discover, install, and share napari plugins
- [Image.sc](https://forum.image.sc/tag/napari) : Help or support requests send to napari community partner
- [Github issues](https://github.com/napari/napari/issues) : Bug reports
- [FAQ](https://www.napari-hub.org/faq) : Reccurent questions about napari, napari-hub and the way for building and sharing plugins
Video tutorial (in french) :
- [Installer NAPARI et faire son premier plugin](https://www.youtube.com/watch?v=lMEVJxIlkXw&ab_channel=ImHorPhenBioimagingresearchgroup)
- [NAPARI Plugin for deep segmentation and manual correction](https://www.youtube.com/watch?v=Wzgl1aDT504&t=872s&ab_channel=ImHorPhenBioimagingresearchgroup)
## Authors
Herearii Metuarea, Research Engineer at INRAe
## Other contributors
Imhorphen team at INRAe:
* David Rousseau, Full Professor, University of Angers
* Pejman Rasti, Assistant professor, University of Angers
* Félix Mercier, Research Engineer, INRAe