https://github.com/heuermh/personal-genome-client

Java client for the 23andMe Personal Genome API.
https://github.com/heuermh/personal-genome-client

Last synced: 9 days ago
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Java client for the 23andMe Personal Genome API.

• Host: GitHub
• URL: https://github.com/heuermh/personal-genome-client
• Owner: heuermh
• License: lgpl-3.0
• Created: 2012-10-10T18:03:50.000Z (about 12 years ago)
• Default Branch: master
• Last Pushed: 2017-03-14T15:44:58.000Z (over 7 years ago)
• Last Synced: 2024-05-02T00:31:10.822Z (6 months ago)
• Language: Java
• Size: 17 MB
• Stars: 6
• Watchers: 4
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: COPYING

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README

        
personal-genome-client

======================

Java client for the 23andMe Personal Genome API.

[![Build Status](https://travis-ci.org/heuermh/personal-genome-client.png)](https://travis-ci.org/heuermh/personal-genome-client)

### Hacking personal-genome-client

Install

 * JDK 1.6 or later, http://openjdk.java.net/

 * Apache Maven 3.0.5 or later, http://maven.apache.org/

To build

    $ mvn install

To build demo webapp

    $ cd webapp

    $ mvn assembly:assembly

To run demo webapp, your 23andMe Personal Genome API client details must be provided as command line system properties

    $ java -DapiKey=apiKey \

           -DapiSecret=apiSecret \

           -Dcallback=http://localhost:8080/after-auth-landing/ \

           -Dscope=scope \

           -jar target/personal-genome-webapp-1.0-SNAPSHOT-jar-with-dependencies.jar 

Open

    http://localhost:8080/

in a browser.

### Using personal-genome-client

    OAuthService service = ...;

    Token accessToken = ...;

    PersonalGenomeConverter converter = ...;

    PersonalGenomeClient client = new ScribePersonalGenomeClient(accessToken, service, converter);

    

    User user = client.user();

    System.out.println("user id: " + user.getId());

    for (Profile profile : user.getProfiles()) {

      System.out.println("profile id: " + profile.getId());

      

      UserName userName = client.names(profile.getId());

      System.out.println("user name: " + userName.getFirstName() + " " + userName.getLastName());

      for (ProfileName profileName : userName.getProfilesNames()) {

        System.out.println("profile name: " + profileName.getFirstName() + " " + profileName.getLastName());

      }

      

      List haplogroups = client.haplogroups(profile.getId());

      System.out.println(haplogroups.size() + " haplogroups:");

      for (Haplogroup haplogroup : haplogroups) {

        System.out.println("   paternal: " + haplogroup.getPaternal());

        System.out.println("   maternal: " + haplogroup.getMaternal());

        List paternalTerminalSnps = haplogroup.getPaternalTerminalSnps();

        if (paternalTerminalSnps != null) {

          System.out.println("   " + paternalTerminalSnps.size() + " paternal terminal SNPs:");

          for (PaternalTerminalSnp paternalTerminalSnp : paternalTerminalSnps) {

            System.out.println("      rsid: " + paternalTerminalSnp.getRsid());

            System.out.println("      ISOGG SNP: " + paternalTerminalSnp.getSnp());

          }

        }

        List maternalTerminalSnps = haplogroup.getMaternalTerminalSnps();

        System.out.println("   " + maternalTerminalSnps.size() + " maternal terminal SNPs:");

        for (MaternalTerminalSnp maternalTerminalSnp : maternalTerminalSnps) {

          System.out.println("      rsid: " + maternalTerminalSnp.getRsid());

          System.out.println("      rCRS position: " + maternalTerminalSnp.getRcrsPosition());

        }

      }

      

      List genotypes = client.genotypes(profile.getId(), "rs1234", "rs2345");

      System.out.println(genotypes.size() + " genotypes:");

      for (Genotype genotype : genotypes) {

        System.out.println("   " + genotype.getValues().size() + " locations:");

        for (Map.Entry entry : genotype.getValues().entrySet()) {

          System.out.println("      " + entry.getKey() + ": " + entry.getValue());

        }

      }

      

      Genome genome = client.genome(profile.getId());

      int length = genomes.getValues().length();

      System.out.println("genome:");

      System.out.println("   values: " + (length < 32) ? genomes.getValues() : genomes.getValues().substring(0, 32) + "...")

    }

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