https://github.com/higlass/higlass-docker

Builds a docker container wrapping higlass-server and higlass-client in nginx
https://github.com/higlass/higlass-docker

gehlenborglab hi-c higlass

Last synced: about 1 month ago
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Builds a docker container wrapping higlass-server and higlass-client in nginx

• Host: GitHub
• URL: https://github.com/higlass/higlass-docker
• Owner: higlass
• License: mit
• Created: 2017-01-20T14:48:26.000Z (almost 8 years ago)
• Default Branch: master
• Last Pushed: 2022-05-31T05:07:50.000Z (over 2 years ago)
• Last Synced: 2024-04-24T11:05:25.621Z (8 months ago)
• Topics: gehlenborglab, hi-c, higlass
• Language: Shell
• Size: 5.66 MB
• Stars: 29
• Watchers: 6
• Forks: 14
• Open Issues: 47
• Metadata Files:
  • Readme: README-DEPLOY.md
  • License: LICENSE

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README

        

# higlass-docker: Deployment

The following describes setup instructions for a linux machine running ubuntu.

Once you've connected, install docker as you would locally.

(For more help with these steps, see the

[Docker docs](https://docs.docker.com/engine/installation/linux/ubuntu/).)

SSH in, and then get the file system tools Docker needs:

```

sudo apt-get update

sudo apt-get install -y curl \

    linux-image-extra-$(uname -r) \

    linux-image-extra-virtual

```

Add the Docker repo to apt-get:

```

sudo apt-get install apt-transport-https \

                       ca-certificates

curl -fsSL https://yum.dockerproject.org/gpg | sudo apt-key add -

# Verify the fingerprint:

apt-key finger | grep -A1 '5811 8E89 F3A9 1289 7C07  0ADB F762 2157 2C52 609D'

sudo add-apt-repository \

       "deb https://apt.dockerproject.org/repo/ \

       ubuntu-$(lsb_release -cs) \

       main"

```

And install docker itself:

```

sudo apt-get update

sudo apt-get -y install docker-engine

```

Finally, call our script to setup all the containers.

```

curl https://raw.githubusercontent.com/hms-dbmi/higlass-docker/master/start_production.sh | bash

```

When you're done with the instance, clean up:

```

aws ec2 terminate-instances --instance-id $INSTANCE_ID

# Wait while instance terminates, and then

aws ec2 delete-security-group --group-id $GROUP_ID

aws ec2 delete-key-pair --key-name $KEY_NAME

rm ~/$KEY_NAME.pem

```