https://github.com/hsfzxjy/igem-data

Biobricks data crawled from iGEM official website.
https://github.com/hsfzxjy/igem-data

Last synced: 18 days ago
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Biobricks data crawled from iGEM official website.

• Host: GitHub
• URL: https://github.com/hsfzxjy/igem-data
• Owner: hsfzxjy
• License: mit
• Created: 2018-01-26T05:36:05.000Z (almost 7 years ago)
• Default Branch: master
• Last Pushed: 2018-01-29T05:31:16.000Z (almost 7 years ago)
• Last Synced: 2023-10-20T20:15:32.854Z (about 1 year ago)
• Size: 107 MB
• Stars: 0
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# igem-data

This repository contains nearly all of the BioBrick information on [iGEM official website](http://parts.igem.org/Main_Page), including basic information, distribution information, documentations and user experiences. The data will be updated after iGEM Giant Jamboree every year.

**NOTE** The datasets are stored with Git LFS. A plugin [git-lfs](https://git-lfs.github.com/) should be installed to support large file uploading and downloading.

## Structure

Each dataset is packed as a gzipped tarball, with following directory structure:

```

processed/

    .info

    .doc

    .exp

    ...

```

where `` is the identifier of each part (e.g. `BBa_B0034`).

`.doc` and `.exp` contain the documentation and user experiences of each part, persisted in [wikitext format](https://www.mediawiki.org/wiki/Wikitext). `.info` contains the basic information (packed using [msgpack](https://msgpack.org/)), with a structure as below:

```javascript

{

    part_id: Number,

    part_name: String,

    part_nickname: String,

    part_results: String,

    part_type: String,

    release_status: String,

    sample_status: String,

    sequencing: String,

    short_desc: String,

    short_name: String,

    twins: Array of String,

    author: String,

    group: String,

    categories: Array of String,

    creation_date: String,       // YYYY-MM-DD

    distributions: Array of {    // Distribution Kits Infomation

        blast_url: String,

        distribution: String,    // Distribution Name, e.g. 'Spring 2017 Distribution'

        plasmid: String,         // e.g. 'pSB1A2'

        plate: {

            name: String,

            sequencing: String,

            well: String

        }

    },

    features: Array of {         // Features on the sequence

        id: Number,

        start: Number,

        end: Number,

        direction: String,

        type: String

    },

    parameters: Array of {

        name: String,

        units: String,

        value: String

    }

}

```